Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30755
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical pr... 31 0.86
AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical ... 27 1.4
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 29 2.6
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr... 29 3.5
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49067-3|CAA88852.3| 591|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z34799-8|CAA84319.3| 591|Caenorhabditis elegans Hypothetical pr... 28 6.0
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 6.0
L23647-2|AAK29995.1| 773|Caenorhabditis elegans Hypothetical pr... 28 8.0
L23647-1|AAL11102.1| 624|Caenorhabditis elegans Hypothetical pr... 28 8.0
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 28 8.0
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 28 8.0
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 28 8.0
>Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical
protein T16G1.8 protein.
Length = 365
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 547 YVDESAVED---PPPKKPKLEYPQDENSIAHFLMNLVQREENEDRAFFTSITSAVSSLSE 717
Y +ES++E PPP P ++ P+D + + +V EN AF S S + +SE
Sbjct: 190 YDEESSLEGMAPPPPPPPPIDIPKDVKTYDYRTSEVVSHSENYKPAFVPS-ASYLEDVSE 248
Query: 718 RSK 726
+
Sbjct: 249 EGQ 251
>AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical
protein M04G7.2 protein.
Length = 550
Score = 26.6 bits (56), Expect(2) = 1.4
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 365 DAYVKSLRMGRNRVKPYIHAEAL-EFLDAVFVNKTKSS-QKVDSRLSDEDTQLKIQ*NG* 538
D++VK + R YIH+ +L +AV K+S QK D L T+ I +G
Sbjct: 133 DSFVKKIEPNERRATQYIHSNSLSRSNEAVPPGNVKTSQQKADHHLI-RTTRSLIGLDGE 191
Query: 539 TKSMLTRA 562
T+++ ++A
Sbjct: 192 TEAVYSKA 199
Score = 22.2 bits (45), Expect(2) = 1.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 305 NNKHKNKSVLLMSKKWTN 358
N KHK KSV + KK N
Sbjct: 75 NEKHKRKSVQQVVKKVVN 92
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = -3
Query: 687 GSEERSILVFFALHQVHEKMSYAVLVLWIF*FGFLGWWILYSALVNIDFV 538
G E ++L+F + VH + V +W+ F +WI+++ ++ ID++
Sbjct: 461 GIAEFALLIFNSNGLVHWSVLIFVCSIWVISASF--YWIMFTTILRIDYI 508
>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
protein F55C5.4 protein.
Length = 1010
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = -1
Query: 731 SNFDLSDKLETADVMEV--KNALSSFSSRCTKF 639
+NFDL+++LET DV+ V ++AL + CTKF
Sbjct: 123 ANFDLTEELET-DVISVMCQHALYAHRPTCTKF 154
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 284 LAPHRSPPKPQPVVLVPILCTSPVPQA 204
+ PHRSP P P+VLV P PQA
Sbjct: 254 IEPHRSPSPPHPLVLV----VHPAPQA 276
>Z49067-3|CAA88852.3| 591|Caenorhabditis elegans Hypothetical
protein C44F1.1 protein.
Length = 591
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/102 (20%), Positives = 48/102 (47%)
Frame = -2
Query: 730 RTLTSQTNSRRQTLWK*RTLYPRFLRAAPSS*ENELCCSRLVDILVWVSWVVDPLQRSRQ 551
+ L SQ++S Q L L +R + C+ ++ V ++ +VD Q + +
Sbjct: 63 KLLCSQSSSNAQILLFANQLNEPSVRTTSLKYDYGFLCATFPEMGVTLNSMVDRRQLATR 122
Query: 550 HRLRSTILLNLQLRVLV*ESTVYFLGRLSFVNEHSIKKLQSL 425
+ ++ + LN+ +++V S + ++ N+ + LQS+
Sbjct: 123 YAIQLEVHLNIDNKIIVVHSLITHPFLIAITNDQTEPLLQSI 164
>Z34799-8|CAA84319.3| 591|Caenorhabditis elegans Hypothetical
protein C44F1.1 protein.
Length = 591
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/102 (20%), Positives = 48/102 (47%)
Frame = -2
Query: 730 RTLTSQTNSRRQTLWK*RTLYPRFLRAAPSS*ENELCCSRLVDILVWVSWVVDPLQRSRQ 551
+ L SQ++S Q L L +R + C+ ++ V ++ +VD Q + +
Sbjct: 63 KLLCSQSSSNAQILLFANQLNEPSVRTTSLKYDYGFLCATFPEMGVTLNSMVDRRQLATR 122
Query: 550 HRLRSTILLNLQLRVLV*ESTVYFLGRLSFVNEHSIKKLQSL 425
+ ++ + LN+ +++V S + ++ N+ + LQS+
Sbjct: 123 YAIQLEVHLNIDNKIIVVHSLITHPFLIAITNDQTEPLLQSI 164
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 553 DESAVEDPPPKKPKLEYPQDENSIAHFLMNLVQREENEDRAFF 681
D SAV +PP KK + Q E + A L Q+++ + +A++
Sbjct: 648 DTSAVAEPPKKKKRPTKKQKEAAAAAALEQQQQQQQQQMQAYY 690
>L23647-2|AAK29995.1| 773|Caenorhabditis elegans Hypothetical
protein ZC262.3a protein.
Length = 773
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 173 RIDRLSS*KKMLVGQEMYRV*EQVRQAEAWEEICEVLDPNFHR 301
R +RLS +KM+ E YRV + E + + +++ N+H+
Sbjct: 529 RAERLSRVRKMVEAMEKYRVRQMESLHEKYTKRVQIVRDNYHQ 571
>L23647-1|AAL11102.1| 624|Caenorhabditis elegans Hypothetical
protein ZC262.3b protein.
Length = 624
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 173 RIDRLSS*KKMLVGQEMYRV*EQVRQAEAWEEICEVLDPNFHR 301
R +RLS +KM+ E YRV + E + + +++ N+H+
Sbjct: 529 RAERLSRVRKMVEAMEKYRVRQMESLHEKYTKRVQIVRDNYHQ 571
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +2
Query: 311 KHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVNKTKSSQKVDS 490
K++N++ + ++ R+ KS + +KP +A+ + L A F+++TK K+D
Sbjct: 748 KNRNRATI-RRPGYSRKRNEMEKSGGHDDDSLKPLTYADIITRLVARFIHQTKKDMKMDG 806
Query: 491 RLSDEDTQLK 520
D+ ++K
Sbjct: 807 VNEDDLHEIK 816
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +2
Query: 311 KHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVNKTKSSQKVDS 490
K++N++ + ++ R+ KS + +KP +A+ + L A F+++TK K+D
Sbjct: 728 KNRNRATI-RRPGYSRKRNEMEKSGGHDDDSLKPLTYADIITRLVARFIHQTKKDMKMDG 786
Query: 491 RLSDEDTQLK 520
D+ ++K
Sbjct: 787 VNEDDLHEIK 796
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +2
Query: 311 KHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVNKTKSSQKVDS 490
K++N++ + ++ R+ KS + +KP +A+ + L A F+++TK K+D
Sbjct: 728 KNRNRATI-RRPGYSRKRNEMEKSGGHDDDSLKPLTYADIITRLVARFIHQTKKDMKMDG 786
Query: 491 RLSDEDTQLK 520
D+ ++K
Sbjct: 787 VNEDDLHEIK 796
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,999,088
Number of Sequences: 27780
Number of extensions: 327112
Number of successful extensions: 1184
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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