Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30754
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 80 4e-16
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 60 2e-10
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 56 5e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 55 9e-09
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 54 3e-08
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 51 1e-07
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 43 4e-05
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 31 0.13
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 2.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.6
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 3.6
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 6.4
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 8.4
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 79.8 bits (188), Expect = 4e-16
Identities = 39/85 (45%), Positives = 55/85 (64%)
Frame = +3
Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
+DA TIIREL+V HPAAKL+V A+Q Q+ E+G NFV+V +G R+G+T
Sbjct: 66 NDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPL 125
Query: 435 QIADGYERALDKCLEILPSLICNEI 509
+IA GYE AL +E+L + ++I
Sbjct: 126 EIAKGYEMALSHTMEVLEEICADKI 150
Score = 77.4 bits (182), Expect = 2e-15
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +2
Query: 527 KEVTKGIVAAIMSKQYGHEQFISELVTKACVAILP-EKTTFNVDNVRVCKILGAGLLQSE 703
KE+ K I I SKQYG+E F+S+LV KA + +LP + + FNVDN+RV KI+G+ L S+
Sbjct: 157 KELIKAIRTCISSKQYGNEDFLSDLVAKAILTVLPKDPSKFNVDNIRVVKIMGSSLYNSQ 216
Query: 704 VLSGMVFRR 730
V+ GMVF R
Sbjct: 217 VVKGMVFPR 225
Score = 74.9 bits (176), Expect = 1e-14
Identities = 31/66 (46%), Positives = 49/66 (74%)
Frame = +1
Query: 58 MALHVPKAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 237
MAL VPKA G PQ+ ++G R+ G+E+AV RN NA ++ ++ R++ GPNG NK+++NH+
Sbjct: 1 MALRVPKASG-PQLFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHL 59
Query: 238 DKQFVT 255
+ F+T
Sbjct: 60 QQTFLT 65
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 60.5 bits (140), Expect = 2e-10
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +3
Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
+D TI+ +++VEH AKL+V S+ QD E+G GT V+VL+G G+
Sbjct: 74 NDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPI 133
Query: 435 QIADGYERALDKCLEILPSL 494
+IADGYE+A ++ L ++
Sbjct: 134 RIADGYEKACQVAVKHLDAI 153
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 56.0 bits (129), Expect = 5e-09
Identities = 27/72 (37%), Positives = 41/72 (56%)
Frame = +3
Query: 246 ICYSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGV 425
I +D TI++ L V HPAAK++V S QD E G GT V++L+G + G+
Sbjct: 56 ILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGI 115
Query: 426 TTSQIADGYERA 461
+ IA+ ++RA
Sbjct: 116 HPTVIAESFQRA 127
Score = 31.9 bits (69), Expect = 0.097
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 76 KAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMI 225
KA VP +D + +E NI A + A ++R++ GP GM+KMI
Sbjct: 3 KAATVPVAFQDREKP----QEVRLSNIMAARSVADAIRTSLGPKGMDKMI 48
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 55.2 bits (127), Expect = 9e-09
Identities = 28/69 (40%), Positives = 40/69 (57%)
Frame = +3
Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
+D TI++ LD+ HPAAK +V ++ QDAEVG GT V+V +G GV++
Sbjct: 64 NDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSH 123
Query: 435 QIADGYERA 461
I GY +A
Sbjct: 124 LIIRGYRKA 132
Score = 32.3 bits (70), Expect = 0.073
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 58 MALHVPKAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIIN 231
M+L P+ P + +LK+G G + + NINAC ++R+ GP G +K++++
Sbjct: 1 MSLGGPQIPVI--VLKEGTDDSQGRGQLL-SNINACVAVQDTIRTTLGPLGADKLMVD 55
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/81 (30%), Positives = 44/81 (54%)
Frame = +3
Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
+D TI+ LDVEHPA K++V +Q QD EVG GT V++++ + + +
Sbjct: 61 NDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPT 120
Query: 435 QIADGYERALDKCLEILPSLI 497
I GY A+ + ++ + ++
Sbjct: 121 TIITGYRLAIREAVKFMTDVL 141
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 76 KAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 255
+AP + G ++ SG E+ +N+ A A V+S+ GP G++KM+++ I VT
Sbjct: 3 QAPRESTLFLSGEKI-SG-EDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVT 60
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 51.2 bits (117), Expect = 1e-07
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +3
Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
+D I+RE++V HPAAK M+ ++ QD EVG GT VI+L+G +
Sbjct: 59 NDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPV 118
Query: 435 QIADGYERALDKCLEILPSL 494
+ +++AL+ L I+ +
Sbjct: 119 VMIRSFKQALEDALSIIDEI 138
Score = 29.1 bits (62), Expect = 0.68
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 136 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 255
+A NI A K A +R+ GP M KM+++ + +T
Sbjct: 19 KAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLT 58
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +3
Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
+D TI++ + +++ AAK++V S++QD EVG GT V V + +
Sbjct: 61 NDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQ 120
Query: 435 QIADGYERALDKCLEIL 485
I DGY A ++ L
Sbjct: 121 VIIDGYRIATKTAIDAL 137
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 512 DTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVCKILGAGL 691
D +NI T + + I+S+ H ++L A A+L K + N+DN+++ KILG L
Sbjct: 154 DLENIARTT--LSSKILSQNKNH---FAQL---AVDAVLRLKGSTNLDNIQIIKILGGKL 205
Query: 692 LQSEVLSGMVFRR 730
S + G + +
Sbjct: 206 DDSFLDEGFILNK 218
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 197 YAERTLCANCLQALIFLYTASSNPENIRA 111
+AER C NC L F YT NP I A
Sbjct: 65 FAERIFCKNCGTTLYFAYTNGKNPYFINA 93
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 406 NYSAWE*LPVKLLMDMREHLTNVWKSFLLSFVMXXXXXXXXXSYKGYCCCYHV 564
NYS WE + + L +R L N KSF+L+ V+ G C H+
Sbjct: 559 NYSLWEAVGISLNYIVRNGLINSHKSFVLT-VLSSSVPLFQTDVSGACELVHL 610
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 720 TIPESTSDCNSPAPRILQTLTLSTLNVVFSGSIATQAFVTSS 595
++P S S S + TLT S +V ++G+ A TSS
Sbjct: 304 SVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSS 345
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 720 TIPESTSDCNSPAPRILQTLTLSTLNVVFSGSIATQAFVTSS 595
++P S S S TLT S V F+G+ A TSS
Sbjct: 412 SVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATFTSS 453
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 609 KPVLQYYQKKLHLMLIMLEFAKF*VLDCCNLRYFLEWYL 725
KP L Y ++ HL + + KF LD CN+ YF+ YL
Sbjct: 140 KPTLLYTNQRDHLDRLC-DQVKF-YLDQCNVEYFVAPYL 176
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 619 NTGFRDKLRNELFMTILFRHDSSNNTLCNFFNVF 518
N F + + E+ LF HD NN L N +F
Sbjct: 230 NAPFPNFISKEILHYYLFIHDEDNNDLSNSKQIF 263
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 411 VVPLQLLIMLLTRQSQSWYHD 349
+ PL + LL +QSWYH+
Sbjct: 1329 IPPLDRFLNLLGASAQSWYHE 1349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,197
Number of Sequences: 5004
Number of extensions: 53387
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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