BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30752 (711 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 33 0.17 09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 33 0.22 06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437... 30 2.1 06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 28 8.4 01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841... 28 8.4 >08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870, 3661975-3662133,3662193-3662243,3662838-3663018, 3663102-3663228,3663322-3663431,3663529-3663667, 3663767-3663876,3664002-3664071,3664247-3664320, 3664458-3664553,3664682-3664777,3665041-3665168, 3665422-3665656,3665743-3665910,3666274-3666381, 3666468-3666617,3666905-3667015,3667118-3667297, 3667427-3667555,3667819-3667914,3668108-3668293, 3668431-3668603,3668720-3668921 Length = 1150 Score = 33.5 bits (73), Expect = 0.17 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 284 RCPWSPGAKVIGVLHAVHLVVSYQFV 207 RC WSP ++GV + H+V +Y FV Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455 >09_04_0202 - 15544498-15545037,15546043-15546449,15546874-15546977, 15547580-15547788,15548092-15549428,15551680-15551941 Length = 952 Score = 33.1 bits (72), Expect = 0.22 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +2 Query: 452 WKLIALWENNKVYFKILNTNVTNTWYWESALTGTATIWPSEST 580 WK I W + LN + T Y +S L IWP +ST Sbjct: 403 WKDIGFWNEGNGILRQLNLGKSTTKYADSVLDLNPVIWPGKST 445 >06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399, 4375942-4376137,4376385-4376451,4376895-4376998, 4377090-4377174,4377309-4377369,4377694-4377825, 4377924-4377993,4379261-4379413,4379583-4379694, 4379779-4379920,4380023-4380140,4380862-4380957, 4381061-4381189 Length = 593 Score = 29.9 bits (64), Expect = 2.1 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = +3 Query: 183 SEVITNVVNKLIRNN--KMNCMEYAYNFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 353 SE I+++ N+L R+ K+ C N S A I S+L S LS+ TRL CTS Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400 >06_03_0095 - 16575938-16576585,16577028-16577219,16577294-16577392, 16577496-16577618,16577717-16577929,16578143-16578251, 16578339-16578427,16578604-16578880,16578974-16579084, 16579160-16580508,16581218-16581631 Length = 1207 Score = 27.9 bits (59), Expect = 8.4 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = -3 Query: 394 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL*AYSMQFILLFRI 215 +L +IA S + K + + GE K W PDD +PK A + F LL + Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372 Query: 214 SLFTTFVMTSLFFS 173 L++ F+ SL+ S Sbjct: 373 MLYSYFIPISLYIS 386 >01_03_0206 - 13783169-13783651,13783761-13783903,13783962-13784128, 13784641-13785149,13786031-13786312,13786397-13786792, 13787232-13787504 Length = 750 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 449 SWKLIALWENNKVYFKILNTNVTNTWYWESALTGTATIWPSESTASIV 592 SW IA + V + N ++ N W+W + GTAT + + +V Sbjct: 516 SWSYIA--NASSVGYAPGNFSMQNNWFWFEKVVGTATPEKDQQDSKVV 561 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,938,707 Number of Sequences: 37544 Number of extensions: 321300 Number of successful extensions: 969 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 949 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 969 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1839213168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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