Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30751
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   117   2e-27
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   116   2e-27
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   3.5  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.0  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  117 bits (281), Expect = 2e-27
 Identities = 59/83 (71%), Positives = 71/83 (85%), Gaps = 1/83 (1%)
 Frame = -3

Query: 500 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLP 324
           +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P
Sbjct: 105 DLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVP 164

Query: 323 AKEGKENAKPRHKAPKIQRLVTP 255
            KEGK   KP  KAPKIQRLVTP
Sbjct: 165 KKEGK---KPYTKAPKIQRLVTP 184



 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 44/65 (67%), Positives = 48/65 (73%)
 Frame = -1

Query: 700 G*SVRR*MEGLCIRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSV 521
           G SV     G   ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSV
Sbjct: 38  GDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSV 97

Query: 520 RGCIL 506
           RGCI+
Sbjct: 98  RGCIV 102


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  116 bits (280), Expect = 2e-27
 Identities = 58/83 (69%), Positives = 71/83 (85%), Gaps = 1/83 (1%)
 Frame = -3

Query: 500 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLP 324
           +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P
Sbjct: 105 DLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVP 164

Query: 323 AKEGKENAKPRHKAPKIQRLVTP 255
            KEGK   KP  KAPKIQRLVTP
Sbjct: 165 KKEGK---KPYTKAPKIQRLVTP 184



 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 44/65 (67%), Positives = 48/65 (73%)
 Frame = -1

Query: 700 G*SVRR*MEGLCIRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSV 521
           G SV     G   ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSV
Sbjct: 38  GDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSV 97

Query: 520 RGCIL 506
           RGCI+
Sbjct: 98  RGCIV 102


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 570 WPFDIRRRTRLFVRTPCFIGNPCLSLPPATRIHSPSIHRLTD 695
           +PFD+ R    +V    F+GN  L   P+  I   ++ RLT+
Sbjct: 315 FPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTE 356


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +3

Query: 300 SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNN 479
           S+ FS  G   A       +I + K E +   GSTFG   +G       R++   L H+N
Sbjct: 79  SVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDN 135

Query: 480 KSQD 491
             QD
Sbjct: 136 DIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,739
Number of Sequences: 5004
Number of extensions: 49411
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)