Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30751
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 99 2e-21
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 98 5e-21
07_01_1073 + 9566727-9566963,9566992-9567180 32 0.51
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 2.7
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 3.6
02_05_0956 - 33064104-33066425 28 6.3
11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683... 28 8.3
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 28 8.3
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 99 bits (238), Expect = 2e-21
Identities = 53/84 (63%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Frame = -3
Query: 500 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVL 327
+LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R
Sbjct: 107 DLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTF 166
Query: 326 PAKEGKENAKPRHKAPKIQRLVTP 255
K GK+ + KAPKIQRLVTP
Sbjct: 167 TTKNGKKVS----KAPKIQRLVTP 186
Score = 81.8 bits (193), Expect = 5e-16
Identities = 38/60 (63%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Frame = -1
Query: 676 EGLCIRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCILT 503
+G ++ GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCI++
Sbjct: 46 KGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVS 105
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = -2
Query: 258 PLVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 118
PL LQ KS AEY KLLAQR KE + RR E +
Sbjct: 186 PLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 98.3 bits (234), Expect = 5e-21
Identities = 52/84 (61%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Frame = -3
Query: 500 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVL 327
+LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R
Sbjct: 107 DLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTF 166
Query: 326 PAKEGKENAKPRHKAPKIQRLVTP 255
K GK+ + KAPKIQRLVTP
Sbjct: 167 TTKNGKKVS----KAPKIQRLVTP 186
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Frame = -1
Query: 676 EGLCIRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCILT 503
+G ++ GG DKQGFPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCI++
Sbjct: 46 KGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVS 105
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = -2
Query: 258 PLVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 118
PL LQ KS AEY KLLAQR KE + RR E +
Sbjct: 186 PLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>07_01_1073 + 9566727-9566963,9566992-9567180
Length = 141
Score = 31.9 bits (69), Expect = 0.51
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 430 FPSVNPGISWAPLRTITRAKTERLASKYIHELIYVFSLHRGAVCN--MSGPLTSEDEHGC 603
F S + ++ L TITRAKTE + E ++V R +CN G + E G
Sbjct: 37 FNSDDDAMALRILNTITRAKTETSPGRAKAEEMFV----RERMCNGTSDGCGSGSGEDGT 92
Query: 604 LSGRPVSSGILACRCR 651
SG G CRCR
Sbjct: 93 WSGGSREDGQRRCRCR 108
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = -3
Query: 419 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 261
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 163 CTEKEGIQGASPGRDQTQAVSFN 95
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 318 LGWEHAFDDITTYIIFFAKV 377
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>11_04_0351 +
16666398-16666532,16666911-16667048,16667398-16668306,
16668383-16668511,16668774-16668996,16669085-16669231,
16669332-16669573,16669660-16669689,16669784-16669865,
16669968-16670128,16670775-16670898,16671206-16671414
Length = 842
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 237 VYAAELRGD*PLDLRCLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQL 386
+Y L D PL L++ LGW+H+F + Y I + E L
Sbjct: 34 LYGPNLVADHPLAGGRLLATLKCILLLLGWDHSFTEYIKYEIGWESWEHL 83
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 288 MSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 467
++GF +FFSFLG FD +I + L+ G T G + ++ +N+ GT+
Sbjct: 104 LTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNYKGTI 159
Query: 468 A 470
+
Sbjct: 160 S 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,287
Number of Sequences: 37544
Number of extensions: 365642
Number of successful extensions: 1001
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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