Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30749
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    28   1.6  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   3.7  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   8.5  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   8.5  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   8.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.5  

>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 622 DESTALTMPVGQLREEVTVESNQILTTQ 705
           ++S AL + V QLREEV    NQ+L  Q
Sbjct: 304 EQSKALRILVSQLREEVICLKNQLLAHQ 331


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 212 YRPSAYLLHENNFTSGDQVSSAEIGENLVL 301
           Y  S+ +LH +    GD+V + E+G  +VL
Sbjct: 376 YTSSSSILHGHPLLRGDEVGNFELGSTVVL 405


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 242 NNFTSGDQVSSAEIGENLVLQVDVQPSSIYGGFARSCVAKTSEVSTNVENEYLVT 406
           +NF  G Q + A+ G N +     + +SI G    S     S+   N++N++L T
Sbjct: 131 DNFNEGLQSAIAQTGNNYMFTTSRRNNSISG----SITIPESDQQINLQNKFLST 181


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 77  NANSSETGNINHKSIPHQMHIQNW*TKRNSCIQ 175
           N N S T +++   +PH + + N+ T  +SC Q
Sbjct: 292 NINES-TNHVDSSYLPHPIQLSNYFTLPSSCAQ 323


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 138 YKTGEQNVTLAFNVSMLTTAGTIANTGPPPTCSMRIISRLETKSVPQK*ER 290
           Y T     TL  + ++ T++GT  N+    T S   +   ++KS  +K  R
Sbjct: 108 YNTSSTTTTLTTSTTLNTSSGTTLNSTSKTTTSSVAVDDQKSKSDSKKERR 158


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +2

Query: 341 ARSCVAKTSEVSTNVENEYLVTDEDGCAKDPAIFGEWERSEDGSALRAAFNAFKFPVVTI 520
           A SC    + +  N E EYL+     C  D       + S+D + ++   +  KF  V +
Sbjct: 287 AHSCKLLYALLQFNHETEYLIQPWSDCLVDVGFKLVNDESKDDTLVQELLSFHKFLQVVV 346

Query: 521 YDS---NATFASALENAY 565
            +S   + T + A+  A+
Sbjct: 347 DESFLHDETLSYAMRKAF 364


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 311  VQPSSIYGGFARSCVAKTSEVSTNVENEYLVTDEDGCAKDPAIF 442
            V+  +IYG   R  +     + + V    +  D+ GC ++P +F
Sbjct: 878  VERINIYGEQTRKSIKIRKIIDSEVTEWDVSVDDSGCIRNPQLF 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,383
Number of Sequences: 5004
Number of extensions: 62282
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)