Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30748
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   118   9e-28
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   118   9e-28
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   2.1  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.7  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.4  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  118 bits (284), Expect = 9e-28
 Identities = 49/75 (65%), Positives = 61/75 (81%)
 Frame = +3

Query: 27  MAFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 206
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 207 TCQVAYSRIEGDHIV 251
           TCQ+  SR+ GD+++
Sbjct: 61  TCQIVSSRVNGDYVL 75



 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 36/69 (52%), Positives = 49/69 (71%)
 Frame = +1

Query: 511 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 690
           MKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++Q
Sbjct: 163 MKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQ 222

Query: 691 FSKYIKLGV 717
           FS  I  G+
Sbjct: 223 FSGLIADGI 231



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 34/84 (40%), Positives = 45/84 (53%)
 Frame = +2

Query: 257 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 436
           A+S ELPRYG+K GL N+ AAY+TG                              E +++
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137

Query: 437 GPGAFRCYLDVGLARTTTGARVFG 508
           GP  F+ +LDVGL RT+TG+RVFG
Sbjct: 138 GPRPFKVFLDVGLKRTSTGSRVFG 161


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  118 bits (284), Expect = 9e-28
 Identities = 49/75 (65%), Positives = 61/75 (81%)
 Frame = +3

Query: 27  MAFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 206
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 207 TCQVAYSRIEGDHIV 251
           TCQ+  SR+ GD+++
Sbjct: 61  TCQIVSSRVNGDYVL 75



 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 36/69 (52%), Positives = 49/69 (71%)
 Frame = +1

Query: 511 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 690
           MKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++Q
Sbjct: 163 MKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQ 222

Query: 691 FSKYIKLGV 717
           FS  I  G+
Sbjct: 223 FSGLIADGI 231



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 34/84 (40%), Positives = 45/84 (53%)
 Frame = +2

Query: 257 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 436
           A+S ELPRYG+K GL N+ AAY+TG                              E +++
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137

Query: 437 GPGAFRCYLDVGLARTTTGARVFG 508
           GP  F+ +LDVGL RT+TG+RVFG
Sbjct: 138 GPRPFKVFLDVGLKRTSTGSRVFG 161


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 314 QHNLSDQPSHHNVATHVNKQAHNMVTFNPRVGHL 213
           QH+L  +   H   TH+ K+ H+   F  RV +L
Sbjct: 59  QHDLDQEQDAHPRTTHLQKRQHSENRFGVRVENL 92


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 356 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 264
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 637  AEYMRSLEQDDEDSFKRQFSKYIK 708
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,036
Number of Sequences: 5004
Number of extensions: 62155
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)