Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30748
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   100   2e-21
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...    97   1e-20
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156...    29   5.0  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 46/73 (63%), Positives = 55/73 (75%)
 Frame = +3

Query: 33  FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 212
           FVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T 
Sbjct: 4   FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITA 60

Query: 213 QVAYSRIEGDHIV 251
           Q+ Y+ I GD ++
Sbjct: 61  QIVYATIAGDIVM 73



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 32/69 (46%), Positives = 55/69 (79%)
 Frame = +1

Query: 511 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 690
           +KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + F+  
Sbjct: 160 LKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAH 219

Query: 691 FSKYIKLGV 717
           FS+Y+K G+
Sbjct: 220 FSEYLKKGI 228



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 43/84 (51%), Positives = 46/84 (54%)
 Frame = +2

Query: 257 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 436
           AYSHELPRYG++VGLTNYAAAY TG                          +Y VEP D 
Sbjct: 76  AYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADE 135

Query: 437 GPGAFRCYLDVGLARTTTGARVFG 508
               FR  LDVGL RTTTG RVFG
Sbjct: 136 -RRPFRALLDVGLIRTTTGNRVFG 158


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 45/73 (61%), Positives = 54/73 (73%)
 Frame = +3

Query: 33  FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 212
           FVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T 
Sbjct: 4   FVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITA 60

Query: 213 QVAYSRIEGDHIV 251
           Q+ Y+ I GD ++
Sbjct: 61  QIVYATIAGDIVM 73



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 32/69 (46%), Positives = 55/69 (79%)
 Frame = +1

Query: 511 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 690
           +KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + F+  
Sbjct: 160 LKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAH 219

Query: 691 FSKYIKLGV 717
           FS+Y+K G+
Sbjct: 220 FSEYLKKGI 228



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 43/84 (51%), Positives = 46/84 (54%)
 Frame = +2

Query: 257 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 436
           AYSHELPRYG++VGLTNYAAAY TG                          +Y VEP D 
Sbjct: 76  AYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADE 135

Query: 437 GPGAFRCYLDVGLARTTTGARVFG 508
               FR  LDVGL RTTTG RVFG
Sbjct: 136 -RRPFRALLDVGLIRTTTGNRVFG 158


>01_01_0182 -
           1561779-1561873,1561977-1562050,1562140-1562207,
           1562279-1562371,1562521-1562604,1562697-1562752,
           1562843-1562950,1563051-1563225,1563237-1563422
          Length = 312

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -2

Query: 218 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 39
           HL  Y +  +  ++  FR       +NN  +TS ++++  T+P   Y +   +LF+ H  
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170

Query: 38  NECH 27
            + H
Sbjct: 171 GDIH 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,214,902
Number of Sequences: 37544
Number of extensions: 395454
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)