Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30748
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 121 7e-28
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 103 1e-22
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10) 31 0.96
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.3
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.3
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.3
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.3
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 30 2.2
SB_23025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 121 bits (291), Expect = 7e-28
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +1
Query: 511 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 690
+KGAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S+KRQ
Sbjct: 195 LKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQ 254
Query: 691 FSKYIKLGV 717
FS YIK GV
Sbjct: 255 FSAYIKNGV 263
Score = 100 bits (240), Expect = 1e-21
Identities = 49/84 (58%), Positives = 53/84 (63%)
Frame = +2
Query: 257 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 436
AY+HELP +GVKVGLTNYAAAY TG EYNVE VD
Sbjct: 110 AYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDG 169
Query: 437 GPGAFRCYLDVGLARTTTGARVFG 508
PGAFRC+LDVGLART+TGARVFG
Sbjct: 170 SPGAFRCFLDVGLARTSTGARVFG 193
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +3
Query: 90 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 215
RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 103 bits (248), Expect = 1e-22
Identities = 50/84 (59%), Positives = 54/84 (64%)
Frame = +2
Query: 257 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 436
AY+HELPRYGVKVGLTNYAAAY TG EYNVE +D
Sbjct: 15 AYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESIDG 74
Query: 437 GPGAFRCYLDVGLARTTTGARVFG 508
PGAFRC+LDVGLART+TGARVFG
Sbjct: 75 SPGAFRCFLDVGLARTSTGARVFG 98
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 511 MKGAVDGGLNVPH 549
+KGAVDGGL +PH
Sbjct: 100 LKGAVDGGLEIPH 112
>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
Length = 475
Score = 31.1 bits (67), Expect = 0.96
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -1
Query: 702 VLAELSLERILIILFKTSHVFSNMQTKDVSPVYFSIEL--FGFCIIARESFDGMRNIEAT 529
VLAE+ +E+ F + + V +++E FGF + E D MR + +T
Sbjct: 329 VLAEVPIEKRAAPTFDLD--LDELPVERALGVRWNVETDTFGFKVSNTEKADTMRGVLST 386
Query: 528 VNSTLHSPKTRAPVVVRAK 472
++S APV++R K
Sbjct: 387 ISSVFDPLNFAAPVIMRGK 405
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 594 ELFGFCIIARESFDGMRNIEATVNSTLHSPKTRAPVVVRAK 472
+ FGF + E D MR + +T++S APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604
>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 594 ELFGFCIIARESFDGMRNIEATVNSTLHSPKTRAPVVVRAK 472
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 594 ELFGFCIIARESFDGMRNIEATVNSTLHSPKTRAPVVVRAK 472
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 594 ELFGFCIIARESFDGMRNIEATVNSTLHSPKTRAPVVVRAK 472
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 780
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 594 ELFGFCIIARESFDGMRNIEATVNSTLHSPKTRAPVVVRAK 472
+ FGF + E D MR + +T++S APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 594 ELFGFCIIARESFDGMRNIEATVNSTLHSPKTRAPVVVRAK 472
+ FGF + E D MR + +T++S APV++R K
Sbjct: 881 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 594 ELFGFCIIARESFDGMRNIEATVNSTLHSPKTRAPVVVRAK 472
+ FGF + E D MR + +T++S APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 574 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 708
D+ K+ NAE+ RA +++ ++S D+E + R+F + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201
>SB_23025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 289 HTITWQLM*ISRHTIWSPSIRE*ATWHVTSLLERRTIRRYLGVLYLFLS*TTRRL 125
H I W + S+HT ++ R WHVT + + T+ ++ Y ++ T++ +
Sbjct: 191 HNIQWYVKITSQHTTFTSRSRHNIQWHVT-ITSQHTMAHHVTTYYGHVTVTSQHI 244
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 177 LIVRLSNKDVTCQVAYSRIEGD-HIVC 254
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 45 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 140
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -2
Query: 314 QHNLSDQPS--HHNVATHVNKQAHNMVTFNPRVGHLACYIFVGETHNQTI 171
QHN PS HHN T ++ HN +T + H I + H TI
Sbjct: 148 QHNTITIPSQYHHNTITIPSRHQHNTITIPSQYHHNTIKI-PSQYHRNTI 196
>SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +3
Query: 27 MAFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQD-KNKYNTP--KYRLIVR--- 188
+ F K K Y + Q + + R EGK+ + +R+ + N N P K + V
Sbjct: 41 VTFGKHFKGSLYIESTQRQKEERTEGKSAKHKDERVGKRCILNGLNVPQCKNSIYVNYEL 100
Query: 189 LSNKDVTCQVAYSRIEGDHIVCL 257
LS K++TC + +GD ++ L
Sbjct: 101 LSQKEITCPYTFPEGDGDILITL 123
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 466 CRLSTHHYWCSCLWTMKGAVDGGLNVPHSIK 558
C + Y+C+C+W+ V G L S K
Sbjct: 62 CSVHLDFYYCTCVWSSMAGVPGSLMADPSSK 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,741,183
Number of Sequences: 59808
Number of extensions: 485058
Number of successful extensions: 1407
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -