Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30747
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    29   0.69 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.7  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   6.4  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    26   6.4  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.5  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.5  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   8.5  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 24  DKQY*VLMEKEHQPDSMATITMNPEYPPSEVYSTSEPPPAY 146
           +K+  V+ EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 63  PDSMATITMNPEYPPSEVYSTSEPPP 140
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 63  PDSMATITMNPEYPPSEVYSTSEPPP 140
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 51  KEHQPDSMATITMNPEYPPSEVYSTS 128
           + +  DS +TI   PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 371 ANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINE 505
           + A  ++ +PP  SSV   T+ P+S   S+  D  LN  E+ + E
Sbjct: 77  SEAPRINEIPPSTSSVEKSTTIPNS---SVVLDHLLNEGENTLEE 118


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 44  HGKRTPARLDGYNNYESGIS 103
           + K+   RL+GYN ++SG S
Sbjct: 151 YNKKAGVRLEGYNGHKSGFS 170


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 60  QPDSMATITMNPEYPPSEVYSTSEPP 137
           QP + +T+  +P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 110 RRRIFRIHSYCSHRVWLVFFFHEDLILFIKIYL 12
           RRRIFR H      +W+  FF   L++  +IY+
Sbjct: 32  RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 96  EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVA 254
           E+    + + S  PP  + + STSV  A   A+ +V S+  LG+    +S  A
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNTSSTA 267


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 51  KEHQPDSMATITMNPEYPPSEVYSTSEPPPAYR 149
           K    DS  + T +     SE YSTS+ PP  R
Sbjct: 305 KRQSLDSETSETSSESESESEYYSTSKQPPVKR 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,690
Number of Sequences: 5004
Number of extensions: 57376
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)