Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30747
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022) 35 0.079
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2) 33 0.24
SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40) 31 0.97
SB_53105| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-11) 29 3.9
SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4) 29 5.2
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11) 28 6.8
SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035) 28 6.8
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_35292| Best HMM Match : AFG1_ATPase (HMM E-Value=6.8) 28 9.0
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 28 9.0
>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
Length = 313
Score = 34.7 bits (76), Expect = 0.079
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 634 IGNLNTV*SLQVRRPLQQNCRTQ--DSHHSSLVSHSYRRKFSAIVFVYFGLGMVECVVF 464
+GNL T+ + ++ R L++ CR H + S Y R F A+ F + +V C F
Sbjct: 43 LGNLGTIVTFKITRRLRRQCRPPCFPFFHRKIASAVYYRVFVALWIAAFVIALVPCFTF 101
>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
Length = 835
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 347 VADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDNCRKFA 526
+ + + H + G PP S TS+P++ PS + D +N I + +
Sbjct: 569 ITPSSISTSEEHKIAGKPPRPKSSKRRTSKPTTHLPSSKQHDTVNDDTKPIPHPPSVRKS 628
Query: 527 TIRMTHQTRVMRVLSPTVL--LKRTTN 601
++R + +R LSP V+ +K+T +
Sbjct: 629 SLRKSFSQGDVRCLSPEVISSVKKTVS 655
>SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40)
Length = 598
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 200 GRFLLHLGNLYIGFELGSTRSSCHQLEQLDAMLDQEL 310
GRFL +L N+Y FE GSTRSS + ++++ +L
Sbjct: 563 GRFLGYLDNIY-NFEFGSTRSSKQKDSTIESLSKDKL 598
>SB_53105| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-11)
Length = 376
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 710 STTLVHTAFLVVC*ESARQLIKVKLNRQFE 621
S T V TAFLV+C A K+KL+R+ E
Sbjct: 185 SMTFVFTAFLVICTSYAIVWTKLKLHRRHE 214
>SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4)
Length = 339
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 380 HALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAE-SKINEDNCRKFA 526
H G P+L+ + TSQPS +P + H + + E+N KFA
Sbjct: 255 HKASGDDPLLNPEVSTTSQPSQPQPYTEGEKIAKHEKCEQKREENMSKFA 304
>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 63 PDSMATITMNPEYPPSEVYSTSEPPPAYRHRVS 161
PD AT + PEY + +PPP Y ++
Sbjct: 28 PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 93 PEYPPSEVYSTSEPPPAYRHRVSTSVQIAKI---AALTVVASSFILGTFILASS 245
P PP +PPPA H + + I + + ++ FI G+F L+SS
Sbjct: 92 PAPPPPPAQPAPQPPPAPPHFLPFIIIITTVIITIVINIIIIRFISGSFRLSSS 145
>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
Length = 540
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 81 ITMNPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAL 257
I+ P E STS YR+RV ++++AK A V+ F L T ++W+ L
Sbjct: 360 ISSKNRIPVDETSSTSRGGVGYRNRVE-NIKVAKTVAAIVL--MFALCTAPFQTAWIML 415
>SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)
Length = 169
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 389 HGVPPMLSSVLPETSQP-SSSRPSLFKDDA 475
+G+PP ++ + +P SS+ PS+F+DD+
Sbjct: 31 YGIPPSAANFIVPRKRPLSSTAPSVFRDDS 60
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.9 bits (59), Expect = 9.0
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Frame = +2
Query: 257 RSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPLPLANAHALHGVP-PMLSSVLPETS 433
RS + E DA+LD E + R DEP+ N L G P P+L L + S
Sbjct: 199 RSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPNL-LLRGRPVPILEEDLEKLS 257
Query: 434 QPSS-SRPSLFKDDALNHAESKINEDNCRKFATIRMTHQTR---VMRVLSPTVLLKRTTN 601
+ +R F + + + + R + H+ R ++ PT+ +R
Sbjct: 258 DAGNVTRRMRFIQRSKEDLKKRFTREYVRSLEERQQKHEERSGEQLKGARPTIQHQRNVP 317
Query: 602 LKRLDRVQ 625
L+ +++++
Sbjct: 318 LRLIEQLK 325
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 51 KEHQPDSMATITMNPEYPPSEVYSTSEPPPAYRHRVSTSVQ 173
+ H P S + T P PP +T++ PPAY R S ++Q
Sbjct: 91 RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130
>SB_35292| Best HMM Match : AFG1_ATPase (HMM E-Value=6.8)
Length = 305
Score = 27.9 bits (59), Expect = 9.0
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Frame = +2
Query: 272 QLEQLDAMLDQELALEGRAYGNDALVADEPLPLANAHAL----HGVPPM--LSSVLPETS 433
Q +D L+ + A G A L DEP+ L + H+L +GV L+S + +
Sbjct: 153 QTHPIDRTLEDQSADAGFAGLTRMLSCDEPMDLFSEHSLVNVVNGVKAKGPLASYVALSM 212
Query: 434 QPSSSRPSLFKDDALNHAESKINEDNCRKFATIRMTHQTRVMRVLSPTVLLKRTTNLKRL 613
+ P LF + L + INE C A +R+ T M + P L++ + + L
Sbjct: 213 TTIGASPDLFVTEGLEYLGVLINE-RCFG-AALRLIANTLPMFLPFPDKLVQDSRFTRIL 270
Query: 614 DRV 622
R+
Sbjct: 271 HRL 273
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 39 VLMEKEHQPDSMATITMNPEYPPSEVYSTSEPPPAYRHRVSTSVQIA 179
V++ + P +I PE P + ++S PP +V++S Q +
Sbjct: 514 VMLSTQQMPSPNTSIKQEPESPNTCIFSQQPPPQPAIKKVASSPQFS 560
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,839,267
Number of Sequences: 59808
Number of extensions: 454427
Number of successful extensions: 1347
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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