Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30747
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41039-5|AAL11488.1|  357|Caenorhabditis elegans Synapse defecti...    29   2.6  
U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defecti...    29   2.6  
U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    29   2.6  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U41039-5|AAL11488.1|  357|Caenorhabditis elegans Synapse defective
           protein 9, isoforma protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
 Frame = +2

Query: 179 EDCSTNSGRFLLHLGNLYIGFELGSTRSSCH-QLEQLDAMLDQELALEG---RAYGNDAL 346
           +D S+ S R +L    + +GF+ GST S  H QL+Q+   L  EL++     ++  +D  
Sbjct: 160 KDASSESDRSVL----ISLGFDFGSTLSLNHQQLQQVVRELKGELSISPDTVQSDHSDDF 215

Query: 347 VADEPLPLANAH-ALHGVPPMLSSVLPETSQPSSSR 451
             D P P+A A+ +  G    L++++   +  S  R
Sbjct: 216 EQDSPPPMAIANISTVGGEATLAAMIVAATNASGQR 251


>U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defective
           protein 9, isoformd protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
 Frame = +2

Query: 179 EDCSTNSGRFLLHLGNLYIGFELGSTRSSCH-QLEQLDAMLDQELALEG---RAYGNDAL 346
           +D S+ S R +L    + +GF+ GST S  H QL+Q+   L  EL++     ++  +D  
Sbjct: 255 KDASSESDRSVL----ISLGFDFGSTLSLNHQQLQQVVRELKGELSISPDTVQSDHSDDF 310

Query: 347 VADEPLPLANAH-ALHGVPPMLSSVLPETSQPSSSR 451
             D P P+A A+ +  G    L++++   +  S  R
Sbjct: 311 EQDSPPPMAIANISTVGGEATLAAMIVAATNASGQR 346


>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
 Frame = +2

Query: 179 EDCSTNSGRFLLHLGNLYIGFELGSTRSSCH-QLEQLDAMLDQELALEG---RAYGNDAL 346
           +D S+ S R +L    + +GF+ GST S  H QL+Q+   L  EL++     ++  +D  
Sbjct: 238 KDASSESDRSVL----ISLGFDFGSTLSLNHQQLQQVVRELKGELSISPDTVQSDHSDDF 293

Query: 347 VADEPLPLANAH-ALHGVPPMLSSVLPETSQPSSSR 451
             D P P+A A+ +  G    L++++   +  S  R
Sbjct: 294 EQDSPPPMAIANISTVGGEATLAAMIVAATNASGQR 329


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 329 YGNDALVADEPLPLANAHALH-GVPPMLSSVLPETSQPSSSRPSLFKD 469
           YG +  V D+P+ ++       G PP +S ++PE   P+     + KD
Sbjct: 292 YGIEITVDDQPIIISEGKPKQPGEPPQVSYIVPELCFPTGLTDEMRKD 339


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +2

Query: 296 LDQELALEGRAYGN-DALVADEPLPL---ANAHALHGVPPMLSSVLPETSQPSSSR 451
           L + L+ E R+Y + + L+  E  P+   +N  +L       SS+L +T QPSSSR
Sbjct: 8   LQRSLSHEMRSYSSLNPLLPSEDTPIQSFSNGVSLEEGKQASSSLLRDTGQPSSSR 63


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +2

Query: 296 LDQELALEGRAYGN-DALVADEPLPL---ANAHALHGVPPMLSSVLPETSQPSSSR 451
           L + L+ E R+Y + + L+  E  P+   +N  +L       SS+L +T QPSSSR
Sbjct: 8   LQRSLSHEMRSYSSLNPLLPSEDTPIQSFSNGVSLEEGKQASSSLLRDTGQPSSSR 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,884
Number of Sequences: 27780
Number of extensions: 338814
Number of successful extensions: 1177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)