Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30746
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    31   0.12 
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    27   3.3  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    26   4.4  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   7.6  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 129 FASLQTLDCLDTRALYSRLNFFDIDLLKYSAENKNGNVMVS 251
           F  + T++ L   A+ + L F D+D+++Y  +N  GN +++
Sbjct: 300 FGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVIT 340


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 344 VKDDLREQLNLYLKALHSNSTETVLEN 424
           +KD+L EQ+NL      +NST T++++
Sbjct: 47  LKDELVEQMNLLDSRRSTNSTRTIVDS 73


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 272 LAMLLEGATGETADEIRSALRLSSVKDDLREQLNLYLKALH--SNSTETVLENANAIFVS 445
           LAM L+     T   + +  R     ++++E LNL+L  L   + + E  LE   A+F++
Sbjct: 21  LAMYLDNLEANTDKNVLALCREYLASENVKEVLNLFLTRLPLLAQAPEKELEPILAVFIN 80


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 136 AFRRWIVLIHEHCTPD*TSSILI 204
           AFRR++ L H+  TPD TS  +I
Sbjct: 18  AFRRFVSLTHKDPTPDTTSCNII 40


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3

Query: 543 CYDSVITKVHWETSE 499
           C+DS+++ +HW ++E
Sbjct: 313 CHDSIVSTMHWASTE 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,836
Number of Sequences: 5004
Number of extensions: 54413
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)