Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30746
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 50 1e-06
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 50 2e-06
11_02_0014 - 7352619-7352918,7353173-7353418 48 5e-06
11_02_0011 - 7337618-7338496,7338596-7338991 46 4e-05
11_01_0767 + 6438648-6438809,6439146-6440000 44 1e-04
11_01_0750 - 6315126-6315896,6316371-6316784 44 1e-04
11_02_0012 - 7346282-7347136,7347234-7347593 42 5e-04
01_01_1152 + 9170628-9171899 41 0.001
11_01_0771 + 6453130-6454488 40 0.001
01_06_0824 - 32243495-32244319,32244449-32244859 39 0.004
04_04_0619 + 26652923-26653267,26653440-26654273 32 0.37
08_01_0447 + 3954917-3954919,3954965-3955217,3955763-3956126,395... 30 2.0
01_04_0137 + 16522157-16522601,16522658-16522712,16523655-165238... 29 2.6
11_06_0512 - 24460391-24462337 28 7.9
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +1
Query: 547 QINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSWMQ 675
Q+N+WV+ T GLI +I IN T++++ NALYFKG+W +
Sbjct: 468 QVNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAE 510
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 541 AQQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSWMQ 675
A Q+N+WV T GLI I+ ++ T +++ NALYFKG+W +
Sbjct: 214 ASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTE 258
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 541 AQQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSWMQ 675
A Q+N+WV+ T GLI I+ ++ T +++ NALYFKG+W +
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTE 50
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 48.4 bits (110), Expect = 5e-06
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
++IN WV+ T LIP I+ ++ LT +++ NA+YFKG W
Sbjct: 88 KKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKW 129
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +1
Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
++IN WV+ T LIP I+ ++ T +++ NA+YFKG W
Sbjct: 138 KKINKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKW 179
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSWM 672
++INAWV TK LI ++ + T +V NA+YFKG W+
Sbjct: 60 KEINAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWL 102
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +1
Query: 547 QINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSWM 672
QIN+WV TKG + +++ I+ T +++ +ALYF+G W+
Sbjct: 145 QINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWL 186
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
++IN WV+ T LI I+ ++ T +++ NA+YFKG W
Sbjct: 126 KKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKW 167
>01_01_1152 + 9170628-9171899
Length = 423
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/42 (33%), Positives = 31/42 (73%)
Frame = +1
Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
+++NA+V+ T+GLI ++ +++ T +++ NA++FKG+W
Sbjct: 161 ERVNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTW 202
>11_01_0771 + 6453130-6454488
Length = 452
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
+QINAW T LI ++ + T +++ NA+YFKG W
Sbjct: 175 KQINAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKW 216
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
++IN W T G I + + ++ T ++ NALYFKG W
Sbjct: 143 REINEWFESATAGRIKDFLPKDAVDRATPAVLGNALYFKGDW 184
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 32.3 bits (70), Expect = 0.37
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +1
Query: 541 AQQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
A ++N +++ T G + + + + T+ ++ NA++FK +W
Sbjct: 120 AAEVNRFISQATNGRLNNTISPGTFGSSTKCVLANAMHFKATW 162
>08_01_0447 +
3954917-3954919,3954965-3955217,3955763-3956126,
3956217-3956435,3957734-3957869,3958261-3958362,
3958439-3958690,3958796-3959092
Length = 541
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 338 SSVKDDLREQLNLYLKALHSNSTETVLENANAIFVSNKLRLKKDY 472
S V DD+R L+LY A E VL+ A +F +N+LR + ++
Sbjct: 97 SFVADDVRSLLSLYNAAFLRTHGEKVLDEA-IVFTTNRLRSELEH 140
>01_04_0137 +
16522157-16522601,16522658-16522712,16523655-16523807,
16525750-16525944,16526096-16526618,16526712-16527103,
16527201-16527270,16527471-16527506,16527818-16527892
Length = 647
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 675 LHPRTLEVQGICHNHLCQSVDLRLIYNRRDESFGFSVNPGVYLLCYDSVI 526
L +T E+Q H+ Q+ +R+ R S G ++P LLC+ S+I
Sbjct: 570 LDMQTGEIQYNFTEHIAQTGSIRIKDPERKPSLGGDISPPTELLCFISLI 619
>11_06_0512 - 24460391-24462337
Length = 648
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 230 KWQCDGIATSIKSTLAMLLEGATGETADEIRSALRLSSVKDDLREQLNLYLK 385
K+ DGI T + S+L ++ + + A+ +L S++D +RE +++K
Sbjct: 19 KYIDDGILTPLLSSLQVIGDAKSFRGAESSSDLAQLDSIRDMMRELQAIFVK 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,656
Number of Sequences: 37544
Number of extensions: 307562
Number of successful extensions: 798
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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