Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30745
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    28   0.93 
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    28   0.93 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   2.1  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    27   2.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   3.7  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   3.7  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    26   3.7  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   4.9  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   8.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 267 RPTALNAPKRKRGGNRKDDWSPHQPRSRILGGA 365
           +P  LNA ++ R   R++ W+    + R+LG A
Sbjct: 3   KPAGLNAARKLRNHRREERWADAHYKKRLLGTA 35


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 267 RPTALNAPKRKRGGNRKDDWSPHQPRSRILGGA 365
           +P  LNA ++ R   R++ W+    + R+LG A
Sbjct: 3   KPAGLNAARKLRNHRREERWADAHYKKRLLGTA 35


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -1

Query: 351 FGFVVDEVTNHLFGSHPFCALVHLAQLVSRAS*CEI*VPLPSAVHWPFSRMQC 193
           FGFV +  T  +F    FC    L  LV +A   E  VP+PSAV+ P   + C
Sbjct: 765 FGFVRNATTFGVFVE--FCD--GLVALVPKAYISEEYVPVPSAVYKPQQSVTC 813


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 354 EFGFVVDEVT-NHLFGSHPFCALVHLAQLVSR 262
           E+G VVD +  NH  G HPF    H  Q++ R
Sbjct: 400 EYGDVVDVIIDNHDTGKHPFHLHGHTFQVLER 431


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 129 QIPHSRSGPAHI*PSG---SSFPTYIASSKRANVPQKARELKSHIRKPSRPTAL 281
           Q P +++  A++ P+G   S+    + SSK  NVP+ A E  S   K    +AL
Sbjct: 90  QTPSTKASVANVKPAGAAESAQNANLISSKSENVPEPAGEKVSMPEKQDLQSAL 143


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 141 SRSGPAHI*PSGSSFPTYIASSKRANVPQKARELKSHI 254
           S S P H  PS  S     ++ KRAN+PQ+   L   I
Sbjct: 22  STSRPLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRI 59


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 222 VHWP-FSRMQCT*GMRSPTVRYELVQIESVVFVCVLFRVSEGYS 94
           V W  FS+ + T G RS  + +  ++ +S   V   FRV +G++
Sbjct: 39  VEWHRFSKGKATVGTRSELLSFAYLKFQSATAVQEFFRVYQGHT 82


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 KSHIRKPSRPTALNAPKRKRGGNRKDDWSPHQP 341
           K H  + + PTA++  KR+   +R  D+ P  P
Sbjct: 496 KQHYSESADPTAISGMKRRAHSDRVFDFPPCDP 528


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 231 ARELKSHIRKPSRPTALNAPKRKRGGNRKDDWSPH 335
           + ++KS   + + P+AL A      G+ K+  SPH
Sbjct: 179 SNKIKSEASESASPSALQALDSTAAGSSKEHSSPH 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,504
Number of Sequences: 5004
Number of extensions: 56889
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)