Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30744
(734 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U45982-1|AAA93319.1| 357|Homo sapiens GPR-9-6 protein. 31 3.2
BC095516-1|AAH95516.1| 365|Homo sapiens CCR9 protein protein. 31 3.2
BC069678-1|AAH69678.1| 369|Homo sapiens chemokine (C-C motif) r... 31 3.2
AY242127-1|AAO92294.1| 357|Homo sapiens chemokine (C-C motif) r... 31 3.2
AJ132337-1|CAB43477.1| 369|Homo sapiens chemokine receptor CCR9... 31 3.2
AF145440-1|AAF66700.1| 357|Homo sapiens CC chemokine receptor 9... 31 3.2
AF145439-1|AAF66699.1| 369|Homo sapiens CC chemokine receptor 9... 31 3.2
S74529-1|AAB33427.1| 89|Homo sapiens amino-terminal domain of ... 31 5.7
>U45982-1|AAA93319.1| 357|Homo sapiens GPR-9-6 protein.
Length = 357
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -1
Query: 596 IVQFCLFFLLLRCVDELTAHLVLSGHWSP*HLQRKMRHTP*DIFVRSQYSHNGCPALQTE 417
I+ F L F+++ C + H ++ S H K+ T +FV SQ+ +N +QT
Sbjct: 208 ILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTI 267
Query: 416 THYCFTAEIGGAVVPTRVD 360
Y I V T +D
Sbjct: 268 DAYAMF--ISNCAVSTNID 284
>BC095516-1|AAH95516.1| 365|Homo sapiens CCR9 protein protein.
Length = 365
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -1
Query: 596 IVQFCLFFLLLRCVDELTAHLVLSGHWSP*HLQRKMRHTP*DIFVRSQYSHNGCPALQTE 417
I+ F L F+++ C + H ++ S H K+ T +FV SQ+ +N +QT
Sbjct: 216 ILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTI 275
Query: 416 THYCFTAEIGGAVVPTRVD 360
Y I V T +D
Sbjct: 276 DAYAMF--ISNCAVSTNID 292
>BC069678-1|AAH69678.1| 369|Homo sapiens chemokine (C-C motif)
receptor 9 protein.
Length = 369
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -1
Query: 596 IVQFCLFFLLLRCVDELTAHLVLSGHWSP*HLQRKMRHTP*DIFVRSQYSHNGCPALQTE 417
I+ F L F+++ C + H ++ S H K+ T +FV SQ+ +N +QT
Sbjct: 220 ILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTI 279
Query: 416 THYCFTAEIGGAVVPTRVD 360
Y I V T +D
Sbjct: 280 DAYAMF--ISNCAVSTNID 296
>AY242127-1|AAO92294.1| 357|Homo sapiens chemokine (C-C motif)
receptor 9 protein.
Length = 357
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -1
Query: 596 IVQFCLFFLLLRCVDELTAHLVLSGHWSP*HLQRKMRHTP*DIFVRSQYSHNGCPALQTE 417
I+ F L F+++ C + H ++ S H K+ T +FV SQ+ +N +QT
Sbjct: 208 ILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTI 267
Query: 416 THYCFTAEIGGAVVPTRVD 360
Y I V T +D
Sbjct: 268 DAYAMF--ISNCAVSTNID 284
>AJ132337-1|CAB43477.1| 369|Homo sapiens chemokine receptor CCR9
protein.
Length = 369
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -1
Query: 596 IVQFCLFFLLLRCVDELTAHLVLSGHWSP*HLQRKMRHTP*DIFVRSQYSHNGCPALQTE 417
I+ F L F+++ C + H ++ S H K+ T +FV SQ+ +N +QT
Sbjct: 220 ILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTI 279
Query: 416 THYCFTAEIGGAVVPTRVD 360
Y I V T +D
Sbjct: 280 DAYAMF--ISNCAVSTNID 296
>AF145440-1|AAF66700.1| 357|Homo sapiens CC chemokine receptor 9B
protein.
Length = 357
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -1
Query: 596 IVQFCLFFLLLRCVDELTAHLVLSGHWSP*HLQRKMRHTP*DIFVRSQYSHNGCPALQTE 417
I+ F L F+++ C + H ++ S H K+ T +FV SQ+ +N +QT
Sbjct: 208 ILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTI 267
Query: 416 THYCFTAEIGGAVVPTRVD 360
Y I V T +D
Sbjct: 268 DAYAMF--ISNCAVSTNID 284
>AF145439-1|AAF66699.1| 369|Homo sapiens CC chemokine receptor 9A
protein.
Length = 369
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -1
Query: 596 IVQFCLFFLLLRCVDELTAHLVLSGHWSP*HLQRKMRHTP*DIFVRSQYSHNGCPALQTE 417
I+ F L F+++ C + H ++ S H K+ T +FV SQ+ +N +QT
Sbjct: 220 ILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTI 279
Query: 416 THYCFTAEIGGAVVPTRVD 360
Y I V T +D
Sbjct: 280 DAYAMF--ISNCAVSTNID 296
>S74529-1|AAB33427.1| 89|Homo sapiens amino-terminal domain of
EWS|last three zinc fingers of the DNA-binding domain
protein.
Length = 89
Score = 30.7 bits (66), Expect = 5.7
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 6 QARHQALREESQEGRHR*SPIQFRY---ERHYARTEKTLRHQKRLRAVKP 146
QA Q ++ S G+ P Q + ER ++R+++ RHQ+R VKP
Sbjct: 4 QAPSQYSQQSSSYGQQSEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,522,676
Number of Sequences: 237096
Number of extensions: 2065220
Number of successful extensions: 3021
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3021
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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