Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30743
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 103 2e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 103 3e-23
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.64
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.5
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 3.4
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.4
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 26 4.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 6.0
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 26 6.0
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.9
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 103 bits (247), Expect = 2e-23
Identities = 46/87 (52%), Positives = 67/87 (77%)
Frame = +1
Query: 256 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 435
FRK +L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140
Query: 436 GFTNKDSLSQRKTCYAQHTQVRAIKRK 516
GFT + + +KT YAQ +Q+RAI++K
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQK 167
Score = 86.6 bits (205), Expect = 3e-18
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +2
Query: 68 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 244
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D +
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEE 78
Score = 60.1 bits (139), Expect = 3e-10
Identities = 25/57 (43%), Positives = 42/57 (73%)
Frame = +3
Query: 507 QKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 677
++KM ++I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P
Sbjct: 165 RQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAP 221
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 103 bits (246), Expect = 3e-23
Identities = 46/87 (52%), Positives = 66/87 (75%)
Frame = +1
Query: 256 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 435
FRK +L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140
Query: 436 GFTNKDSLSQRKTCYAQHTQVRAIKRK 516
GFT++ +KT YAQ +Q+RAI +K
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQK 167
Score = 88.2 bits (209), Expect = 1e-18
Identities = 38/59 (64%), Positives = 47/59 (79%)
Frame = +2
Query: 68 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 244
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D +
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEE 78
Score = 59.7 bits (138), Expect = 4e-10
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = +3
Query: 510 KKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 677
+KM ++I ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P
Sbjct: 166 QKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAP 221
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 429 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKKMCEIITRDVTNSELREVVNKL 578
LHW+ L+ +Q + P H+GQ S ++ E + V E +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 522 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 653
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 274 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 405
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 369 LPFFNHPPELIGCEVHAVEVAEHITS 292
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 290 CTYSAINLNLRKTFPRQCQL-VDQPGKLRKLFPSILPKQFSFPGYG*Q 150
C +++ + L+K FP +C++ + LR L ++P +F+ G+G Q
Sbjct: 101 CCSASLLMQLKKKFPDRCEIKLYHTPNLRGLRKQLVPHRFN-EGWGLQ 147
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 346 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIKRKCVK 525
++ W L+ T GYV+R GFT+ ++ + K +A + +R +
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFAD-KDTKLYERALQQ 853
Query: 526 SLHATS 543
SL S
Sbjct: 854 SLDTIS 859
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 436 GFTNKDSLSQRKTCYAQHTQVRAIKRK 516
G T +DS+ ++ A H + R +KRK
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRK 33
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 325 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 423
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,574
Number of Sequences: 5004
Number of extensions: 62019
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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