Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30743
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          90   2e-18
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         30   2.1  
SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/57 (71%), Positives = 50/57 (87%)
 Frame = +3

Query: 507 QKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 677
           +KKM +IITR+V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P
Sbjct: 48  RKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKP 104



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 32/51 (62%), Positives = 42/51 (82%)
 Frame = +1

Query: 370 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIKRKCV 522
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AI++K V
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMV 52


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +3

Query: 459 EPTQDVLRPAHSGQSNQKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 638
           EPT D  RP+H   ++     +I  R +   ELR+ + +  P +   D  +  +   P+ 
Sbjct: 276 EPTPDPSRPSHRPGADNLTRDDI--RQIIQQELRKELRRSNPPNQNYDRNRRTYTGIPIS 333

Query: 639 DVCIRKVKVLKRP 677
              IR+ ++ +RP
Sbjct: 334 SKYIREGRIEERP 346


>SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = -2

Query: 560 PEFRVSDVACNDFTH--FLLIALT*VCWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSM 387
           P  R  D  C  FTH   + I++    +   ++   +   LVKPMQ  RR     V+ ++
Sbjct: 85  PTGRSGDWICKFFTHNAIMQISVLTSIFTLTIVSVERYHALVKPMQVGRRLTEDTVWYAV 144

Query: 386 LASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCT 285
           +AS       T  L L+V   +  K   T + CT
Sbjct: 145 IASW------TASLILTVPSFVAIKFDETRKACT 172


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 68  IVDPFTRKDWYDVKAPSMFSKRQ 136
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 157 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 11
           VD +       + +++ D+ PIF  + V  LLL T FT L+   +  DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207


>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -1

Query: 702 SINFEISKRASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 565
           S+   I       L P GC  R  G      S  P + +Q STC P
Sbjct: 444 SVRVTIDGMPKQGLQPGGCDSRISGGRRKGSSSAPPRGAQRSTCRP 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,777,697
Number of Sequences: 59808
Number of extensions: 494536
Number of successful extensions: 1385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)