Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30743
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   109   2e-24
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    30   1.4  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   7.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   7.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   7.4  
Z50109-9|CAA90440.2|  367|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  109 bits (261), Expect = 2e-24
 Identities = 52/89 (58%), Positives = 64/89 (71%)
 Frame = +1

Query: 256 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 435
           FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I
Sbjct: 79  FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138

Query: 436 GFTNKDSLSQRKTCYAQHTQVRAIKRKCV 522
            FT K     +KT Y + +++R I+ + +
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEMI 167



 Score =  101 bits (243), Expect = 4e-22
 Identities = 46/63 (73%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
 Frame = +2

Query: 71  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL-QADTDA 247
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL  ++ D 
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEADF 79

Query: 248 ERF 256
            +F
Sbjct: 80  RKF 82



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 33/57 (57%), Positives = 45/57 (78%)
 Frame = +3

Query: 507 QKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 677
           + +M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP
Sbjct: 163 RSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRP 219


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 620 MAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLLIA 501
           ++GL+   GNG++ +L      FRV DV C +  H  L+A
Sbjct: 184 ISGLIPAFGNGIKEKLEDG--GFRVLDVGCGEGFHSCLLA 221


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 684 SKRASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 559
           S  ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 101 SLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 456  LEPTQDVLRPAHSGQSNQKKMCEII-TRDVT-NSELREVVNKL 578
            +EPT + L PA S ++++ +  EI+  +DVT   E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 456  LEPTQDVLRPAHSGQSNQKKMCEII-TRDVT-NSELREVVNKL 578
            +EPT + L PA S ++++ +  EI+  +DVT   E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 456  LEPTQDVLRPAHSGQSNQKKMCEII-TRDVT-NSELREVVNKL 578
            +EPT + L PA S ++++ +  EI+  +DVT   E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877


>Z50109-9|CAA90440.2|  367|Caenorhabditis elegans Hypothetical
           protein C09H10.9 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 351 PPELIGCEVHAVEVAEHITSLHIFGD*SEFAENLSASVSAC 229
           PP LIGC ++ +       S H  GD S    NL  ++ AC
Sbjct: 117 PPRLIGCLINGIVDGNDTYSKHA-GDESTRNYNLPDAIKAC 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,597
Number of Sequences: 27780
Number of extensions: 358841
Number of successful extensions: 1125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)