Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30741
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    78   1e-15
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    28   0.94 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   6.6  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   8.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 37/73 (50%), Positives = 49/73 (67%)
 Frame = +2

Query: 290 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 469
           DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D
Sbjct: 80  DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPD 139

Query: 470 GMVAMMEYRDFDG 508
            MV +M YR+ DG
Sbjct: 140 AMVVLMNYRE-DG 151



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = +1

Query: 49  MKIYKDIITGDEMFSDTYKMKLVDEVIYE 135
           M +YKD+I+GDE+ SD Y +K VD+++YE
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYE 29



 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 517 PIMMFFKHGLEEEKF 561
           P M+FFK GL  EKF
Sbjct: 154 PYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 251 SLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 388
           SLN +L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 93  SLN-KLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 86   ISSPVIMSL*IFILMDWRRLKII 18
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 442 ELKFLKPAEDVFHYFVHVCFKYFNLVR 362
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 557 FSSSRPCLKNIMIGICDHQSLYIPSWQPCHHNPWTP 450
           F++ R   K +   ICD+ S    +W  C+ N   P
Sbjct: 500 FTTERTVPKTVKEAICDYNSDTSRTWDICNPNKLHP 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,183
Number of Sequences: 5004
Number of extensions: 49789
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)