Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30741
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 305 CRISCHRRRMFRLACGSDYVNSALDGRVRALVSLFSRR 192
           C   C   RM        YVNSAL+  +  + +L  RR
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRR 390


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 305 CRISCHRRRMFRLACGSDYVNSALDGRVRALVSLFSRR 192
           C   C   RM        YVNSAL+  +  + +L  RR
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRR 390


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 450 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 352
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 450 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 352
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 305 CRISCHRRRMFRLACGSDYVNSALDGRVRALVSLFSRR 192
           C   C   RM        YVNSAL+  +  + +L  RR
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRR 390


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -2

Query: 113 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 9
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 188 KTLDLDITLCSRHQPTGHS*ITSST 114
           + +DLD  +C    P G + +++ST
Sbjct: 705 RIMDLDNVMCRTSGPRGVAIVSAST 729


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,845
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)