Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30740X
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 344 LDNIHFRSQPCKSKVQRIDPW 406
           LD +H+ + PC     R   W
Sbjct: 710 LDRLHYETDPCVRYYPRRKEW 730


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 399 IHGRHVNLSVFFNVIDIGRV 458
           IH  + N  +++N+I+I ++
Sbjct: 323 IHNNNYNKKLYYNIINIEQI 342


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 95  FDQPYKYNYITIL 133
           F +P+KY  ITIL
Sbjct: 535 FSKPFKYQGITIL 547


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 184 CPVDLGPLSANGRQGAPEYCNIVI 113
           C   LGP+   G Q +P   NIVI
Sbjct: 48  CEQFLGPVGFGGVQVSPVQENIVI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,907
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)