Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30739
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    94   1e-20
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    94   1e-20
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.4  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    27   1.8  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   2.4  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.2  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   7.3  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.3  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 43/61 (70%), Positives = 51/61 (83%)
 Frame = +1

Query: 73  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 253 D 255
           +
Sbjct: 77  E 77



 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = +3

Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 398
           RER+D YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 78  RERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 43/61 (70%), Positives = 51/61 (83%)
 Frame = +1

Query: 73  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 253 D 255
           +
Sbjct: 77  E 77



 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 25/37 (67%), Positives = 29/37 (78%)
 Frame = +3

Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 365
           RER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 78  RERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 161 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 51
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +3

Query: 177 WICHTFNEASQTLASARNLYQTSGRGRERRDNYVPEVSALEHDIIEVDPDTKDMLKM 347
           ++   +++   TL S RN+  +    RE++   + ++ AL+H     DP++  ++ M
Sbjct: 117 YLIDRYDQYRMTLKSIRNIESSVQPSREKKQKLLDQIYALKHK----DPESPRLVTM 169


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 455 FFFFFYSYNLLITPATIATLGSWLC*LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWD 276
           F F  Y+  L +    +   G     L+  NI+E +++  +    +YF+  M  + +FW 
Sbjct: 342 FLFVMYAVVLAVFFGIMHQNGVIPAVLEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWK 401

Query: 275 IVVTP 261
           I   P
Sbjct: 402 IYSAP 406


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 179 PAILFLRGLVGMIAISSHILLFVSK 105
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 133 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 225
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 258 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 374
           +R D    E + ++ +   +DPD KD+  +++ N  N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,300
Number of Sequences: 5004
Number of extensions: 31766
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)