Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30739
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0066 - 537729-538163 97 4e-21
10_07_0174 + 13815478-13815903 97 6e-21
11_04_0372 + 16915047-16915406,16915493-16916341 29 1.8
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 29 2.3
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 28 4.1
07_03_1712 + 28932328-28932502,28932583-28932902,28933405-28933950 28 4.1
03_03_0201 - 15400953-15401080,15401787-15401882,15402252-154024... 28 4.1
02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916 27 5.4
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374... 27 7.2
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 9.5
05_07_0284 - 28943527-28943625,28944417-28944785 27 9.5
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 27 9.5
03_06_0659 - 35345095-35345135,35345982-35347365 27 9.5
01_06_0089 + 26314805-26315449,26317228-26317845 27 9.5
>03_01_0066 - 537729-538163
Length = 144
Score = 97.5 bits (232), Expect = 4e-21
Identities = 41/61 (67%), Positives = 55/61 (90%)
Frame = +1
Query: 73 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76
Query: 253 D 255
+
Sbjct: 77 E 77
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +3
Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 389
RERR ++VP+ SALE D I VD +T DML L ++ G+ + QP
Sbjct: 78 RERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
>10_07_0174 + 13815478-13815903
Length = 141
Score = 97.1 bits (231), Expect = 6e-21
Identities = 41/61 (67%), Positives = 54/61 (88%)
Frame = +1
Query: 73 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76
Query: 253 D 255
+
Sbjct: 77 E 77
Score = 40.7 bits (91), Expect = 5e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGY 407
RERR ++VPE SALE + I VD +T +ML L ++ G++ Q + Y
Sbjct: 78 RERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128
>11_04_0372 + 16915047-16915406,16915493-16916341
Length = 402
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 311 DDVMFESRHFWDIVVTPLTXXXXSLIEIPRTCECLRRLIKCVAN 180
DDV E R WD++ P+ +I + E + +L++ ++N
Sbjct: 300 DDVWNERRDCWDLLCMPMNTTKLCMIVVTTRSEKVAKLVQTMSN 343
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 326 VGVYFDDVMFESRHFWDIVVTPLTXXXXSLIEIPRTCECLRRLIK 192
V + FDDV E +W++++TP+ I + E + RL++
Sbjct: 252 VFLVFDDVWNERSDYWELLITPMFASKCCDIIVTTRNETVARLVQ 296
>11_04_0364 -
16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 311 DDVMFESRHFWDIVVTPLTXXXXSLIEIPRTCECLRRLIKCVAN 180
DDV E R WD++ P+ +I + E + +L++ + N
Sbjct: 252 DDVWNERRDCWDLLCEPMNTAKLCMIIVTTRSERVAKLVQTMPN 295
>07_03_1712 + 28932328-28932502,28932583-28932902,28933405-28933950
Length = 346
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 177 WICHTFNEASQTLASARNLYQTSGRGRER 263
WI H + A+ LA+A N Y+ S R R
Sbjct: 132 WIMHEYRLAADPLAAAANTYKPSSSSRFR 160
>03_03_0201 -
15400953-15401080,15401787-15401882,15402252-15402402,
15404352-15404548,15404660-15404819
Length = 243
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 231 LYQTSGRGRERRDNYVPEVSALEHDIIEVDPDTKDMLKM 347
++ SG GR+R+D+ EV + ++ VD M K+
Sbjct: 88 VFHFSGHGRQRKDDNGDEVDGRDEELCPVDYKNGSMFKI 126
>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
Length = 722
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 183 CHTFNEASQTLASARNLYQTSGRGRERRDNYVPEVSALEH 302
C +A + +ASA L + S RE ++NY+ + +EH
Sbjct: 449 CEKVRKAMEDMASA--LQEMSAEARESQENYLHKEKEIEH 486
>05_05_0301 +
23936126-23936267,23937101-23937174,23937338-23937421,
23937502-23937582,23938304-23938384,23938503-23938595,
23939094-23939270,23939838-23939927,23940859-23940925,
23941218-23941309
Length = 326
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 186 HTFNEASQTLASARNLYQTSGRGRERRDNYVPEVSALEH 302
H F + S+ A NL+ G+G + VPE+SALEH
Sbjct: 206 HGFLDVSKV---AGNLHFAPGKGFYESNINVPELSALEH 241
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 324 DTKDMLKMLDFNNINGLQLTQPATQ 398
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
>05_07_0284 - 28943527-28943625,28944417-28944785
Length = 155
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 240 TSGRGRERRDNYVPEVSALE 299
++GR R+R D +VP V+ LE
Sbjct: 36 STGRKRQREDEFVPSVTELE 55
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 97 TLDFDTNKRICEEIAIIPTKPLRNKIAGFATHL--MRRLRHSQVRGISIKLQEEDVRGVT 270
TL+F + I E+ P PL N + G M + + + +R I+ L EE++RG+
Sbjct: 342 TLNFSDHPWIKED-GEAPDTPLDNAVLGRLKQFRAMNQFKKAALRVIAGCLSEEEIRGLK 400
Query: 271 TM 276
M
Sbjct: 401 EM 402
>03_06_0659 - 35345095-35345135,35345982-35347365
Length = 474
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 371 PATNTASYPGWLW 409
PATN A YPG LW
Sbjct: 370 PATNDAPYPGKLW 382
>01_06_0089 + 26314805-26315449,26317228-26317845
Length = 420
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 213 LASARNLYQTSGRGRERRDNYVPEVSA-LEHDII 311
+ASA+ QTSG G++R D + + A L DII
Sbjct: 18 VASAQRWRQTSGGGKDRWDGLLDPLDADLRRDII 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,797,079
Number of Sequences: 37544
Number of extensions: 194782
Number of successful extensions: 535
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -