Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30738
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 90 2e-19
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 54 1e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 53 5e-08
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 29 0.85
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 3.4
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 27 3.4
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 26 4.5
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 4.5
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 4.5
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 6.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.0
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 7.9
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 25 7.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 90.2 bits (214), Expect = 2e-19
Identities = 33/82 (40%), Positives = 45/82 (54%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEG 183
+C+ C GH AR+C + CY CN TGH A +C + E +CY C GH+ R+CP
Sbjct: 18 RCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSS 76
Query: 184 GRESATQTCYNCNKSGHISRNC 249
CY C + GHI+R+C
Sbjct: 77 PNPRQGAECYKCGRVGHIARDC 98
Score = 75.4 bits (177), Expect = 7e-15
Identities = 37/95 (38%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEADR-------------CYRCNGTGHIARDCAQSPDEPSCYNC 144
+C+KC R GH ARDC+ + CY C GH ARDC CY+C
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSC 140
Query: 145 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 249
K GH + C + S Q CY CN+ GHI+ NC
Sbjct: 141 GKIGHRSFECQQA---SDGQLCYKCNQPGHIAVNC 172
Score = 70.1 bits (164), Expect = 3e-13
Identities = 30/63 (47%), Positives = 38/63 (60%)
Frame = +1
Query: 64 RCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 243
RCY C GH AR+C + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 244 NCP 252
+CP
Sbjct: 72 DCP 74
Score = 66.9 bits (156), Expect = 3e-12
Identities = 39/115 (33%), Positives = 51/115 (44%), Gaps = 32/115 (27%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKE--EADRCYRCNGTGHIARDCAQSPDE---PSCYNCNKTGHIARN 171
C+ CN+TGH A +C E + CY C GH+ RDC SP+ CY C + GHIAR+
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARD 97
Query: 172 C-----PEGGRESATQT----------------------CYNCNKSGHISRNCPE 255
C GGR ++ CY+C K GH S C +
Sbjct: 98 CRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQ 152
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +1
Query: 127 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPE 255
P CYNC + GH AR C +G CYNCN++GH + C E
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTE 53
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 231 PHLPQLSRGTKTCYVCGKPGHISRE 305
P +PQ +R CY CG+ GH +RE
Sbjct: 7 PTVPQTTRPGPRCYNCGENGHQARE 31
Score = 29.1 bits (62), Expect = 0.64
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 261 KTCYVCGKPGHISREYDDARN 323
KTCY CG GH+ R+ + N
Sbjct: 58 KTCYACGTAGHLVRDCPSSPN 78
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 231 PHLPQLSRGTKTCYVCGKPGHISRE 305
P P +G + CY CG+ GHI+R+
Sbjct: 74 PSSPNPRQGAE-CYKCGRVGHIARD 97
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARDCA-QSPDE-PSCYNCNKTGHIARN 171
CF C + GH +DC E D C+RC H C+ + P + C+ C++ GH++
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQ 138
Query: 172 CPEG--GRESATQTCYNCNKSGHISRNCPE 255
C + G C C+ H++++C +
Sbjct: 139 CEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEAD----RCYRCNGTGHIARDCAQSPDE--PS---CYNCNKTGH 159
CF+C H C ++ +C+ C+ GH++ C Q+P P C C+ H
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHH 161
Query: 160 IARNCPEGGRESAT 201
+A++C + ++ +
Sbjct: 162 LAKDCDQVNKDDVS 175
Score = 33.1 bits (72), Expect = 0.040
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKE-------EADRCYRCNGTGHIARDCAQ 114
KCF C+ GH + C++ + C C+ H+A+DC Q
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 52.8 bits (121), Expect = 5e-08
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRCYRCNG-TGHIARDCAQSPDEPSCYNCNKTGHIARNCPEG 183
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142
Query: 184 GRESATQTCYNCNKSGHISRNCP 252
R+ + C C+ H S CP
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 32.3 bits (70), Expect = 0.069
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 181 GGRESATQTCYNCNKSGHISRNCP 252
G S + C+NC +GHIS++CP
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCP 103
Score = 29.9 bits (64), Expect = 0.37
Identities = 21/83 (25%), Positives = 28/83 (33%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPE 180
+KC C GH A C E R R T H + + Y K + + E
Sbjct: 125 KKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE 184
Query: 181 GGRESATQTCYNCNKSGHISRNC 249
+ CYNC H +C
Sbjct: 185 -----VRKFCYNCASDEHFGDDC 202
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +1
Query: 43 DCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNC-NKTGHIARNCPEGGRES 195
D E CY C H DC PS N T NCP G S
Sbjct: 181 DVSEVRKFCYNCASDEHFGDDCTL----PSRSNYPESTAFCEANCPSGNDAS 228
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 133 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 252
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARDCAQSPDEP 129
C C GH DC E + C C GHIARDC +P
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 52 EEADRCYRCNGTGHIARDCAQSPDEPS---CYNCNKTGHIARNCP 177
+E C C GH DC + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 28.7 bits (61), Expect = 0.85
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 187 RESATQTCYNCNKSGHISRNCPE 255
R+ Q C NC GH +CPE
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +1
Query: 169 NCPEGGRESATQTCYN----CNKSGHISRNCP 252
+CP+G E T C+N C +G+IS P
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIP 97
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 184 GRESATQTCYNCNKSGHISRN--CP 252
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 112 QSPDEPSCYNCNKTGHIARN--CPEGGR 189
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARDCAQSPDEPS 132
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +1
Query: 100 RDCAQSPDEPS-----CYNCNKTGHIARNCP 177
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 216 LQQVRPHL---PQLSRGTKTCYVCGKP 287
L+QVR HL P + T+T VCG P
Sbjct: 151 LEQVRQHLSRLPAIDPNTRTLLVCGYP 177
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -3
Query: 211 SRSASQTPAPLRDSSV-RCGPSCCSCNMTARPGSVRSRALCAQCR--YICSNGQPLPCNP 41
S AS+ P PL C P+ CS R G VR+ + + R I NG+ +P +P
Sbjct: 19 SNKASKFPLPLAMWDFGHCNPNACSGKRLERLGCVRNLRIGQKFRGVVITPNGK-VPVSP 77
Query: 40 S 38
+
Sbjct: 78 A 78
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 293 HLARVRRCAELAAATLSPLQSTMYIIMPRTDDKQRTPRATHDNRL 427
H A + CA AA+ L+ + I + +R +A HDN L
Sbjct: 401 HPAAIELCARKVAASSGDLRKALDICRHAIELAEREWKAQHDNTL 445
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 691 HGTPASNLSFDKKICTKYIKYILCNAKNCNATPSIVQ 581
HG P S +S K+C + + N +N A PS+V+
Sbjct: 210 HGQPESTMSRKPKLCVQ--SKSMTNIRNSVAKPSLVR 244
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 492 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 394
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = +1
Query: 31 HFARDCKEEADRCYRCNGTGHIARDC 108
H + C CY+C H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = +1
Query: 31 HFARDCKEEADRCYRCNGTGHIARDC 108
H + C CY+C H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 181 GGRESATQTCYNCNKSG 231
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 579 HDYLNDLKHNHSLTSCKNKHERASRDPSIYKS--TVEPHSSVCGADAAL 439
H + + L NH+ T + +++S PSI KS T P S +D AL
Sbjct: 91 HLHFSPLTPNHASTEAVSNFKQSSTIPSISKSNLTNPPLESEKSSDKAL 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,546
Number of Sequences: 5004
Number of extensions: 50488
Number of successful extensions: 246
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -