Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30736
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   130   1e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   125   6e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.2  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    28   1.6  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   4.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.3  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   8.3  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  130 bits (315), Expect = 1e-31
 Identities = 57/89 (64%), Positives = 74/89 (83%)
 Frame = +2

Query: 2   EDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPA 181
           +D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR +  IENPA
Sbjct: 16  DDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPA 75

Query: 182 DVFVISSRPFGQRAVLKFAAHTGASLLRG 268
           DV VISSRP+G RAVLKFAAHTGA+ + G
Sbjct: 76  DVCVISSRPYGHRAVLKFAAHTGATAIAG 104



 Score =  118 bits (284), Expect = 9e-28
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +1

Query: 259 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 438
           IAGRFTPG FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD
Sbjct: 102 IAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVD 161

Query: 439 IAIPCNTKSSHSIGLMWWLLARE 507
           +AIP N K   SIGL W+LLARE
Sbjct: 162 VAIPINNKGYKSIGLAWYLLARE 184



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +3

Query: 534 RDQRWDVVVDLFFYRDPEESEKDEQQ 611
           R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 194 RTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  125 bits (302), Expect = 6e-30
 Identities = 53/89 (59%), Positives = 73/89 (82%)
 Frame = +2

Query: 2   EDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPA 181
           ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAAR +  IENPA
Sbjct: 15  EDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPA 74

Query: 182 DVFVISSRPFGQRAVLKFAAHTGASLLRG 268
           DV V+S+R +G RAVLKFAAHTGA+ + G
Sbjct: 75  DVCVVSTRTYGHRAVLKFAAHTGATAIAG 103



 Score =  119 bits (287), Expect = 4e-28
 Identities = 57/83 (68%), Positives = 64/83 (77%)
 Frame = +1

Query: 259 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 438
           IAGRFTPG FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VD
Sbjct: 101 IAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVD 160

Query: 439 IAIPCNTKSSHSIGLMWWLLARE 507
           IAIP N K   SIGL+W+LLARE
Sbjct: 161 IAIPTNNKGRKSIGLIWYLLARE 183



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 534 RDQRWDVVVDLFFYRDPEESEKDEQQAK 617
           R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 193 RSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +1

Query: 319 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 498
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 499 AR 504
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 367 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 477
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +2

Query: 107 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAH 244
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVH 134


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 572 EEQINHNIPALVTGK-HNTKPQPSRANNHHIKPIEWEDLVLHGIAMSTNLSG 420
           EE  +H    L   K  NTK  P     ++ K I     V HGI  +++L G
Sbjct: 45  EENQSHKSSKLTFFKPSNTKRSPHTPMQNNAKAIRLSTTVRHGIFKNSDLDG 96


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 529 FPVTSAGML--WLICSSTVTLKKVKRM 603
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -2

Query: 191 RTHQRGSRWLRQHEQPEQVFPRYDA 117
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,798
Number of Sequences: 5004
Number of extensions: 69684
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)