Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30736
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 127 1e-29
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 126 2e-29
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058... 29 3.8
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836... 29 3.8
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 29 5.0
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 6.6
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 6.6
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 28 6.6
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 6.6
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 8.7
03_05_0119 + 21004987-21005020,21005970-21006107,21007039-210071... 28 8.7
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 8.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 127 bits (306), Expect = 1e-29
Identities = 58/89 (65%), Positives = 71/89 (79%)
Frame = +2
Query: 2 EDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPA 181
+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP
Sbjct: 17 QDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQ 76
Query: 182 DVFVISSRPFGQRAVLKFAAHTGASLLRG 268
D+ V S+RP+GQRAVLKFA +TGA + G
Sbjct: 77 DIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
Score = 120 bits (290), Expect = 9e-28
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = +1
Query: 259 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 438
IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 439 IAIPCNTKSSHSIGLMWWLLAR 504
I IP N K +SIG ++WLLAR
Sbjct: 163 IGIPANNKGRNSIGCLFWLLAR 184
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/27 (62%), Positives = 24/27 (88%)
Frame = +3
Query: 543 RWDVVVDLFFYRDPEESEKDEQQAKEQ 623
+WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 126 bits (304), Expect = 2e-29
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2
Query: 2 EDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPA 181
+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VAIENP
Sbjct: 17 QDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQ 76
Query: 182 DVFVISSRPFGQRAVLKFAAHTGASLLRG 268
D+ V S+RP+GQRAVLKFA +TGA + G
Sbjct: 77 DIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
Score = 120 bits (290), Expect = 9e-28
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +1
Query: 259 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 438
IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 439 IAIPCNTKSSHSIGLMWWLLAR 504
I IP N K SIG ++WLLAR
Sbjct: 163 IGIPANNKGKQSIGCLFWLLAR 184
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/23 (65%), Positives = 22/23 (95%)
Frame = +3
Query: 543 RWDVVVDLFFYRDPEESEKDEQQ 611
+WDV+VDLFFYRDPEE+++ E++
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEE 220
>06_03_0712 +
23803597-23803945,23804118-23805479,23805743-23805811,
23806050-23806330,23806817-23807076,23807521-23807689,
23807796-23808068,23808251-23808499
Length = 1003
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 449 HATPSLPTLLV*CGGCWHVKVEASYCASP*PAL 547
H+ S P V CGGC+ K+E YC +P P+L
Sbjct: 387 HSVVSTPD--VPCGGCF--KIEILYCITPGPSL 415
>01_06_1133 +
34781799-34782071,34782168-34783166,34783252-34783663,
34783727-34784670
Length = 875
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 439 IAIPCNTKSSHSIGLMWWLLAREG*GFVL-CFPVTSAGMLWLI 564
+AI + +S ++ +W LLA G FVL CF V GM WLI
Sbjct: 237 LAIAISEVNSTALSSLWVLLA--GVLFVLFCFYVVRPGMWWLI 277
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/91 (27%), Positives = 37/91 (40%)
Frame = -2
Query: 467 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRNAA*IWLV 288
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 287 KAPGVKRPAIG*HRCARQTSVQHADRRAVMR 195
K + + R A V +R V+R
Sbjct: 64 KRSRINAALLFVSRNADYVGVAVGNRITVLR 94
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 236 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 81
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 61 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 168
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 196 LITALRSACCTEVCRAHRC*PIAGRFTPGAFTN 294
L+ LR T+V RAHRC P+ F+N
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCFSN 129
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +1
Query: 7 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 186
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 187 VRHLITALRSACCTEVCR 240
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 64 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 243
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 244 HRC 252
RC
Sbjct: 211 GRC 213
>03_05_0119 +
21004987-21005020,21005970-21006107,21007039-21007131,
21009085-21009140,21009433-21009666
Length = 184
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -1
Query: 585 QGHGRRTNQPQHPSAGHGEAQYEASTFTCQQPPHQTNRVGRLGVAWDSNVHKS*WGVCVA 406
+G G T + + + G + AST +Q PHQ + + S ++ GV +A
Sbjct: 18 KGGGSGTMEEKEVAPAQGRKEGGASTRERRQRPHQPPGKEVIRLICTSKINNPRSGVSIA 77
Query: 405 QSNHRNV 385
++ H +V
Sbjct: 78 KAQHNSV 84
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 97 WYPCDQLASYLGKTCSGCSCCRSHREP 177
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,323,634
Number of Sequences: 37544
Number of extensions: 504675
Number of successful extensions: 1226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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