Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30735X
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   105   3e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   103   2e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    72   6e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    71   1e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    51   1e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    50   2e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    49   4e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    36   0.005
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   4.2  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   5.6  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   7.3  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    25   9.7  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  105 bits (253), Expect = 3e-24
 Identities = 44/83 (53%), Positives = 64/83 (77%)
 Frame = +3

Query: 261 AEEHRGLLSIKYPMEHGIVTDWNNMEKIWNYIYSKDQLSTFSEEHPVLFTEAPLNPRRXR 440
           A+  RG+L++KYP+EHGIV +W++MEKIW++ +  ++L    EEHP L TEAPLNP+  R
Sbjct: 58  AQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFY-NELRVAPEEHPCLLTEAPLNPKSNR 116

Query: 441 EKSAELFFETFNVPALFLSMQAV 509
           EK  ++ FETFN PA ++++QAV
Sbjct: 117 EKMTQIIFETFNAPAFYVAIQAV 139



 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 112 IVIHNASTIINTSFADDQIPKCRFPNYIGRPKHTRVMAGALEVEIFVG 255
           +VI N S +    FA D  P+  FP+ +GRP+H  +M G  + + +VG
Sbjct: 8   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVG 55



 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 509 LSLYATGRTTDTVL 550
           LSLYA+GRTT  VL
Sbjct: 140 LSLYASGRTTGIVL 153


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  103 bits (247), Expect = 2e-23
 Identities = 47/83 (56%), Positives = 61/83 (73%)
 Frame = +3

Query: 261 AEEHRGLLSIKYPMEHGIVTDWNNMEKIWNYIYSKDQLSTFSEEHPVLFTEAPLNPRRXR 440
           A+  RGLL I+ P+E GI+ +W++ME+IW+YIYS  QL+T  EEHP+L TE PL   R +
Sbjct: 62  AQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNK 121

Query: 441 EKSAELFFETFNVPALFLSMQAV 509
           EK AE F+ET NVPAL  S+Q V
Sbjct: 122 EKIAEYFYETLNVPALSFSLQPV 144



 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = +1

Query: 79  MELSHVIVNQPIVIHNASTIINTSFADDQIPKCRFPNYIGRPKHTRVMAGALEVEIFVG 255
           M ++ +  NQPI I N S  I   FA D IPKC FP  +GR KH RVM  +++ ++FVG
Sbjct: 1   MTVTEIFDNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 71.7 bits (168), Expect = 6e-14
 Identities = 32/75 (42%), Positives = 47/75 (62%)
 Frame = +3

Query: 285 SIKYPMEHGIVTDWNNMEKIWNYIYSKDQLSTFSEEHPVLFTEAPLNPRRXREKSAELFF 464
           S+ YP+ HG + +W++ME+ W     K  L    E+H  L TE PLNP   RE +AE+ F
Sbjct: 89  SLDYPIRHGQIENWDHMERFWQQSLFK-YLRCEPEDHYFLLTEPPLNPPENRENTAEIMF 147

Query: 465 ETFNVPALFLSMQAV 509
           E+FN   L++++QAV
Sbjct: 148 ESFNCAGLYIAVQAV 162


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 32/83 (38%), Positives = 50/83 (60%)
 Frame = +3

Query: 261 AEEHRGLLSIKYPMEHGIVTDWNNMEKIWNYIYSKDQLSTFSEEHPVLFTEAPLNPRRXR 440
           AE  R LL +KYPME+GI+ D+  M ++W+Y +  ++L        +L TE P+NP   R
Sbjct: 58  AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFF-EKLKIDPRGRKILLTEPPMNPVANR 116

Query: 441 EKSAELFFETFNVPALFLSMQAV 509
           EK  E  FE +    +++++QAV
Sbjct: 117 EKMCETMFERYGFGGVYVAIQAV 139



 Score = 35.5 bits (78), Expect = 0.005
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 109 PIVIHNASTIINTSFADDQIPKCRFPNYIGRP 204
           PIV+ N +  +   +A D  P+ +FP+ +GRP
Sbjct: 5   PIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 27/74 (36%), Positives = 39/74 (52%)
 Frame = +3

Query: 282 LSIKYPMEHGIVTDWNNMEKIWNYIYSKDQLSTFSEEHPVLFTEAPLNPRRXREKSAELF 461
           + IK  + +G V +W+    +W Y   + QL T   EHP+L TE   NP   R K+ E  
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQ-QLKTNPLEHPILITEPFDNPPENRVKTLETM 121

Query: 462 FETFNVPALFLSMQ 503
           FE+   PA +L+ Q
Sbjct: 122 FESLRCPATYLAKQ 135



 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 112 IVIHNASTIINTSFADDQIPKCRFPNYIGRPKHTRVMAG 228
           IVI   S      F+ + IPKC  P+Y G     R + G
Sbjct: 14  IVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG 52


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 22/64 (34%), Positives = 35/64 (54%)
 Frame = +3

Query: 297 PMEHGIVTDWNNMEKIWNYIYSKDQLSTFSEEHPVLFTEAPLNPRRXREKSAELFFETFN 476
           P E  ++++W+ ME++ +Y + K  L     EHP+  TE   NP   R    EL FE +N
Sbjct: 86  PFERNVISNWDLMEQVLDYTFLK--LGIDRMEHPICMTEPLANPTYVRSTMTELLFELYN 143

Query: 477 VPAL 488
            P++
Sbjct: 144 APSV 147


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 25/78 (32%), Positives = 41/78 (52%)
 Frame = +3

Query: 282 LSIKYPMEHGIVTDWNNMEKIWNYIYSKDQLSTFSEEHPVLFTEAPLNPRRXREKSAELF 461
           + +K    +GI+ DW +    W     K++L     E+ ++ TE   NP+  R++  E  
Sbjct: 66  MEVKNGKSNGIIQDWESTLYTWERGL-KEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAA 124

Query: 462 FETFNVPALFLSMQAVSV 515
           FE  +VPA +L+ QAV V
Sbjct: 125 FEQLHVPAFYLTKQAVCV 142


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 297 PMEHGIVTDWNNMEKIWNYIYS---KDQLSTFSEEHPVLFTEAPLNPRRXREKSAELFFE 467
           P++ G V DW  ++  W ++YS   KD   T +  +PV            RE + + FFE
Sbjct: 113 PIQRGRVVDWEALKAFWKHLYSLLLKDPNDT-TFRYPVCLVIPTYWSLYDRELATQFFFE 171

Query: 468 TFNVPALFLSMQ 503
              VP   ++ +
Sbjct: 172 ECQVPGFTIAYE 183


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 276 GLLSIKYPMEHGIVTDWNNMEKIW 347
           GL+++    E  + TD+NN++K W
Sbjct: 305 GLVNVSSTGERVLTTDYNNLKKQW 328


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 112 IVIHNASTIINTSFADDQIPKCRFPNYIGRPKH 210
           ++ HNA TI N  + + +I    +P Y    +H
Sbjct: 485 VINHNAETICNLLYQNPKIKTLYYPKYNTSKEH 517


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 502 CIERNNAGTLNVSKNSSADFSLXLRGFRGASVNS 401
           C+E++ +  + ++ NSS DF     GF  +++ S
Sbjct: 518 CVEKSVSNFVQITANSSGDFFWPYAGFHFSTLVS 551


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 414 APLNPRRXREKSAELFFETFN 476
           APL+     +K  EL FET+N
Sbjct: 185 APLHAEEVSKKMKELLFETYN 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,946
Number of Sequences: 5004
Number of extensions: 44529
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)