BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30733 (462 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 132 2e-31 02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 131 3e-31 02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 78 3e-15 01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 36 0.016 07_01_0802 - 6287180-6287605 29 1.8 03_06_0497 - 34332310-34334415 29 1.8 >07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 Length = 130 Score = 132 bits (318), Expect = 2e-31 Identities = 61/75 (81%), Positives = 69/75 (92%) Frame = +1 Query: 31 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210 MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60 Query: 211 IVVNLTGRLNKCGVI 255 IVV L GRLNKCGVI Sbjct: 61 IVVELNGRLNKCGVI 75 Score = 94.7 bits (225), Expect = 3e-20 Identities = 42/55 (76%), Positives = 49/55 (89%), Gaps = 1/55 (1%) Frame = +3 Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416 SPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+ Sbjct: 76 SPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130 >02_03_0219 + 16541350-16541482,16541605-16541765,16541863-16541940, 16543176-16543445 Length = 213 Score = 131 bits (316), Expect = 3e-31 Identities = 60/75 (80%), Positives = 69/75 (92%) Frame = +1 Query: 31 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210 MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60 Query: 211 IVVNLTGRLNKCGVI 255 IVV L GRLNKCGVI Sbjct: 61 IVVELNGRLNKCGVI 75 Score = 83.8 bits (198), Expect = 6e-17 Identities = 39/51 (76%), Positives = 44/51 (86%), Gaps = 1/51 (1%) Frame = +3 Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 404 SPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L Sbjct: 76 SPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126 >02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 Length = 129 Score = 78.2 bits (184), Expect = 3e-15 Identities = 34/67 (50%), Positives = 48/67 (71%) Frame = +1 Query: 46 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 225 +L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64 Query: 226 TGRLNKC 246 GR+ C Sbjct: 65 HGRIKDC 71 Score = 61.7 bits (143), Expect = 3e-10 Identities = 26/64 (40%), Positives = 46/64 (71%), Gaps = 1/64 (1%) Frame = +3 Query: 225 HRQTKQVWCHSPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 401 H + K + R D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++ Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124 Query: 402 LGFF 413 LG+F Sbjct: 125 LGYF 128 >01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391, 2863431-2863516,2863648-2866272 Length = 1139 Score = 35.9 bits (79), Expect = 0.016 Identities = 14/23 (60%), Positives = 19/23 (82%) Frame = +1 Query: 187 VDDHRAGKIVVNLTGRLNKCGVI 255 VDDH++G+I++ GRLNK GVI Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVI 934 >07_01_0802 - 6287180-6287605 Length = 141 Score = 29.1 bits (62), Expect = 1.8 Identities = 11/32 (34%), Positives = 14/32 (43%) Frame = +3 Query: 198 QSWQDCCKSHRQTKQVWCHSPRFDVPINDIER 293 Q WQDCC+ WC D ++ I R Sbjct: 51 QVWQDCCRQLAAVDDGWCRCGALDHMLSGIYR 82 >03_06_0497 - 34332310-34334415 Length = 701 Score = 29.1 bits (62), Expect = 1.8 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = +1 Query: 172 GEFEIVDDH-RAGKIVVNLTGRLNKCGVIHLVLMFPSTILKDGLICSPHDSLVT*SLQQV 348 G E+V +H +AG+I R+ C L +LK GL+CS D S++QV Sbjct: 575 GLVELVLEHWKAGEITAARDPRIGDCDEDDL-----EVVLKLGLLCSHPDPRRRPSMRQV 629 Query: 349 VASWTMKKPEENTLEE 396 V P TL E Sbjct: 630 VQILEGAAPAPETLPE 645 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,871,016 Number of Sequences: 37544 Number of extensions: 209580 Number of successful extensions: 396 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 394 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 919380308 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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