Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30733
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          132   2e-31
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   131   3e-31
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           78   3e-15
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    36   0.016
07_01_0802 - 6287180-6287605                                           29   1.8  
03_06_0497 - 34332310-34334415                                         29   1.8  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  132 bits (318), Expect = 2e-31
 Identities = 61/75 (81%), Positives = 69/75 (92%)
 Frame = +1

Query: 31  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 211 IVVNLTGRLNKCGVI 255
           IVV L GRLNKCGVI
Sbjct: 61  IVVELNGRLNKCGVI 75



 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 42/55 (76%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416
           SPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 76  SPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  131 bits (316), Expect = 3e-31
 Identities = 60/75 (80%), Positives = 69/75 (92%)
 Frame = +1

Query: 31  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 211 IVVNLTGRLNKCGVI 255
           IVV L GRLNKCGVI
Sbjct: 61  IVVELNGRLNKCGVI 75



 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 39/51 (76%), Positives = 44/51 (86%), Gaps = 1/51 (1%)
 Frame = +3

Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 404
           SPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 76  SPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 34/67 (50%), Positives = 48/67 (71%)
 Frame = +1

Query: 46  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 225
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 226 TGRLNKC 246
            GR+  C
Sbjct: 65  HGRIKDC 71



 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 26/64 (40%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +3

Query: 225 HRQTKQVWCHSPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 401
           H + K     + R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG++
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124

Query: 402 LGFF 413
           LG+F
Sbjct: 125 LGYF 128


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +1

Query: 187 VDDHRAGKIVVNLTGRLNKCGVI 255
           VDDH++G+I++   GRLNK GVI
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVI 934


>07_01_0802 - 6287180-6287605
          Length = 141

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 198 QSWQDCCKSHRQTKQVWCHSPRFDVPINDIER 293
           Q WQDCC+        WC     D  ++ I R
Sbjct: 51  QVWQDCCRQLAAVDDGWCRCGALDHMLSGIYR 82


>03_06_0497 - 34332310-34334415
          Length = 701

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 172 GEFEIVDDH-RAGKIVVNLTGRLNKCGVIHLVLMFPSTILKDGLICSPHDSLVT*SLQQV 348
           G  E+V +H +AG+I      R+  C    L       +LK GL+CS  D     S++QV
Sbjct: 575 GLVELVLEHWKAGEITAARDPRIGDCDEDDL-----EVVLKLGLLCSHPDPRRRPSMRQV 629

Query: 349 VASWTMKKPEENTLEE 396
           V       P   TL E
Sbjct: 630 VQILEGAAPAPETLPE 645


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,871,016
Number of Sequences: 37544
Number of extensions: 209580
Number of successful extensions: 396
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)