Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30733
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             77   9e-15
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_21097| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_13955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 76.6 bits (180), Expect = 9e-15
 Identities = 46/76 (60%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
 Frame = +1

Query: 31  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
           MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH        V   R G+
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH--------VAQPRIGE 52

Query: 211 IVVN-LTGRLNKCGVI 255
           +V    +G L+  GV+
Sbjct: 53  MVTRPCSGALSAAGVV 68


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%), Gaps = 1/24 (4%)
 Frame = +3

Query: 255 SPRFDVPINDIERW-TNLLPSRQF 323
           SPRFDV + DIE+W +NLLPSRQF
Sbjct: 5   SPRFDVGVRDIEQWASNLLPSRQF 28


>SB_21097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 130 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVIHL-VLMFPSTILKDGLIC 306
           ++K+   + +   IG + ++DD R+ +       R   C VIHL  L FP T       C
Sbjct: 13  LLKYHNSIEQQSDIGRYLLMDDLRSKRFSCVSAMRGKSCEVIHLRSLYFPET----SNSC 68

Query: 307 SPHDSLVT*SLQQVVASWTMKKP 375
           SP D LV   L++    W+   P
Sbjct: 69  SPGDPLV---LERPPPRWSSNSP 88


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 64  KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 189
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_13955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 213 CCKSHRQTKQVWCHSPRFDVPINDIERWTNLLPSRQFG 326
           C K HR  +Q   H+  FDV   + E+   +L S Q+G
Sbjct: 108 CSKLHRDDRQ---HTDAFDVHAEECEKAVPVLTSSQYG 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,745
Number of Sequences: 59808
Number of extensions: 242279
Number of successful extensions: 1134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)