BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30733 (462 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08) 77 9e-15 SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04 SB_21097| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27 SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5 SB_13955| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3 >SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08) Length = 120 Score = 76.6 bits (180), Expect = 9e-15 Identities = 46/76 (60%), Positives = 53/76 (69%), Gaps = 1/76 (1%) Frame = +1 Query: 31 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210 MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH V R G+ Sbjct: 1 MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH--------VAQPRIGE 52 Query: 211 IVVN-LTGRLNKCGVI 255 +V +G L+ GV+ Sbjct: 53 MVTRPCSGALSAAGVV 68 >SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 29 Score = 40.7 bits (91), Expect = 6e-04 Identities = 18/24 (75%), Positives = 21/24 (87%), Gaps = 1/24 (4%) Frame = +3 Query: 255 SPRFDVPINDIERW-TNLLPSRQF 323 SPRFDV + DIE+W +NLLPSRQF Sbjct: 5 SPRFDVGVRDIEQWASNLLPSRQF 28 >SB_21097| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 188 Score = 31.9 bits (69), Expect = 0.27 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Frame = +1 Query: 130 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVIHL-VLMFPSTILKDGLIC 306 ++K+ + + IG + ++DD R+ + R C VIHL L FP T C Sbjct: 13 LLKYHNSIEQQSDIGRYLLMDDLRSKRFSCVSAMRGKSCEVIHLRSLYFPET----SNSC 68 Query: 307 SPHDSLVT*SLQQVVASWTMKKP 375 SP D LV L++ W+ P Sbjct: 69 SPGDPLV---LERPPPRWSSNSP 88 >SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 60 Score = 28.7 bits (61), Expect = 2.5 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +1 Query: 64 KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 189 K+IHN RGKR +++ V F TV+M++G F++V Sbjct: 17 KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60 >SB_13955| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 177 Score = 27.9 bits (59), Expect = 4.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 213 CCKSHRQTKQVWCHSPRFDVPINDIERWTNLLPSRQFG 326 C K HR +Q H+ FDV + E+ +L S Q+G Sbjct: 108 CSKLHRDDRQ---HTDAFDVHAEECEKAVPVLTSSQYG 142 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,460,745 Number of Sequences: 59808 Number of extensions: 242279 Number of successful extensions: 1134 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1133 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 945255773 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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