Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30733
(462 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 139 8e-34
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 30 0.93
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 30 0.93
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 29 1.2
U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 27 8.6
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 27 8.6
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 139 bits (337), Expect = 8e-34
Identities = 67/75 (89%), Positives = 71/75 (94%)
Frame = +1
Query: 31 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60
Query: 211 IVVNLTGRLNKCGVI 255
IVVNLTGRLNK VI
Sbjct: 61 IVVNLTGRLNKASVI 75
Score = 98.7 bits (235), Expect = 2e-21
Identities = 44/55 (80%), Positives = 51/55 (92%), Gaps = 1/55 (1%)
Frame = +3
Query: 255 SPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416
SPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKILGFFF
Sbjct: 76 SPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 1 FATKRD*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 168
F T+ D I M + + +DA + H + + + + +RP K+I FL + + GY
Sbjct: 490 FLTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 1 FATKRD*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 168
F T+ D I M + + +DA + H + + + + +RP K+I FL + + GY
Sbjct: 490 FLTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545
>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
F37A4.4 protein.
Length = 1163
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 43 NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 216
NVL D+++ I+ N K KR I C+K L V + GY EI+ H A +
Sbjct: 826 NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885
Query: 217 VN 222
+N
Sbjct: 886 LN 887
>U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical
protein F22A3.2 protein.
Length = 145
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -1
Query: 246 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 100
++V +A E ++ + + F+ +V V + ++DDFG+ PD+DL
Sbjct: 14 SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +2
Query: 314 TTVWL-PSPYNKWW 352
T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 213 CCKSHRQTKQVWCHSPRFDVPINDIERWTNLLP 311
C SH T ++ SP++ +D + W N +P
Sbjct: 348 CTSSHHSTPKLLTPSPQYLKDSDDDDNWKNSIP 380
>AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical
protein Y11D7A.12b protein.
Length = 504
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 389 KVFSSGFFMVHDATTCCK 336
KVFS+GFFM D + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 389 KVFSSGFFMVHDATTCCK 336
KVFS+GFFM D + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,326,557
Number of Sequences: 27780
Number of extensions: 179828
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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