Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30733
         (462 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   132   1e-31
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   132   1e-31
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   132   1e-31
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   130   4e-31
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         124   2e-29
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          77   6e-15
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    77   8e-15
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.5  
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t...    27   8.2  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  132 bits (318), Expect = 1e-31
 Identities = 61/75 (81%), Positives = 69/75 (92%)
 Frame = +1

Query: 31  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 211 IVVNLTGRLNKCGVI 255
           IVV L GRLNKCGVI
Sbjct: 61  IVVELNGRLNKCGVI 75



 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 42/55 (76%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416
           SPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 76  SPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  132 bits (318), Expect = 1e-31
 Identities = 61/75 (81%), Positives = 69/75 (92%)
 Frame = +1

Query: 31  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 211 IVVNLTGRLNKCGVI 255
           IVV L GRLNKCGVI
Sbjct: 61  IVVELNGRLNKCGVI 75



 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 42/55 (76%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416
           SPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 76  SPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  132 bits (318), Expect = 1e-31
 Identities = 61/75 (81%), Positives = 69/75 (92%)
 Frame = +1

Query: 31  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 211 IVVNLTGRLNKCGVI 255
           IVV L GRLNKCGVI
Sbjct: 61  IVVELNGRLNKCGVI 75



 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 42/55 (76%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416
           SPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 76  SPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  130 bits (314), Expect = 4e-31
 Identities = 60/75 (80%), Positives = 68/75 (90%)
 Frame = +1

Query: 31  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 211 IVVNLTGRLNKCGVI 255
           IVV L GRLNKCGVI
Sbjct: 61  IVVELNGRLNKCGVI 75



 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 41/55 (74%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416
           SPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 76  SPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  124 bits (300), Expect = 2e-29
 Identities = 58/75 (77%), Positives = 65/75 (86%)
 Frame = +1

Query: 31  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 210
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 211 IVVNLTGRLNKCGVI 255
           IVV L GRLN CGVI
Sbjct: 67  IVVELNGRLNNCGVI 81



 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 39/55 (70%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 SPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416
           SPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+LGFF+
Sbjct: 82  SPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 34/67 (50%), Positives = 48/67 (71%)
 Frame = +1

Query: 46  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 225
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 226 TGRLNKC 246
            GR+N C
Sbjct: 65  QGRVNDC 71



 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 28/52 (53%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +3

Query: 261 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 413
           R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LGFF
Sbjct: 77  RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 33/67 (49%), Positives = 48/67 (71%)
 Frame = +1

Query: 46  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 225
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 226 TGRLNKC 246
            GR+N C
Sbjct: 65  QGRVNDC 71



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 28/53 (52%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
 Frame = +3

Query: 261 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 416
           R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LGFF+
Sbjct: 77  RQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 109 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 216
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
           T15B16.10 similar to A. thaliana CHP-rich proteins
           encoded by T10M13, GenBank accession number AF001308
          Length = 667

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 201 SWQDCCKSHRQTKQVWCHSPRFD--VPINDIERW 296
           +W   CK HR +   WC    F   +P + IE W
Sbjct: 578 TWFYTCKDHRASLHTWCVLGDFMGLIPKSTIELW 611


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,856,152
Number of Sequences: 28952
Number of extensions: 171125
Number of successful extensions: 327
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)