Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30732
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    27   0.15 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    26   0.34 
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.3  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 227 DPDT*SNRLVVQHLSVLRIHRGPSRKVDELCHMPEKCRLHCSVLLGAL 84
           DP+  S  L+VQ + VLR H     KV ELC     C  + S L G +
Sbjct: 140 DPEVDS--LMVQAIQVLRFHLLELEKVHELC--DNFCHRYISCLKGKM 183


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 498 RLQALNLKNDHLRKRFDALKYDVKKIEEVVY 590
           R   L  +N HL+   D LK +++K++++VY
Sbjct: 166 RCAFLERENCHLKFVTDTLKKELEKLQKIVY 196


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 552 GRRSVCANDRSSSSMPEAG 496
           GRR V  +D SS S  EAG
Sbjct: 24  GRRVVDCDDVSSVSQSEAG 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,826
Number of Sequences: 336
Number of extensions: 3548
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)