Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30732
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 59 3e-09
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906... 34 0.094
02_02_0340 + 9135846-9138377 31 1.2
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 30 2.0
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454... 29 2.7
11_01_0164 - 1342790-1342870,1343031-1343117,1343201-1343319,134... 29 3.5
11_01_0144 + 1187532-1187813,1188913-1189454,1189621-1189707,119... 29 4.7
01_06_0125 + 26711157-26713297,26715026-26715206 29 4.7
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 28 6.2
03_05_0071 - 20491521-20492813 28 6.2
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929... 28 8.2
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 59.3 bits (137), Expect = 3e-09
Identities = 23/36 (63%), Positives = 32/36 (88%)
Frame = +3
Query: 510 LNLKNDHLRKRFDALKYDVKKIEEVVYDLSIRGLLP 617
LNL+ND LRK+FD +KYD++++EEV YD+ IRGL+P
Sbjct: 277 LNLRNDFLRKKFDGMKYDLRRVEEVYYDVKIRGLVP 312
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 ILGVSPVELKEG-FHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNA 498
+L V +++ G F LD+EDYL GL M ++ R VN VT GDY+ P ++ F+ +L+A
Sbjct: 213 VLCVMKLKVSSGEFGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDCPRKVLSFLTDLHA 272
Query: 499 GFR 507
FR
Sbjct: 273 SFR 275
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 5 LDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGISPACGKARLLFEKAHDGYARL 184
LD+ LR+ IR + EV+ SR A+ L ++H ++ GKA+ E Y+RL
Sbjct: 88 LDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGKAKAQVEVIKGLYSRL 146
Query: 185 KDAVP--PTDYFKYQDHWRFMTQ 247
+ + P Y++Y WR TQ
Sbjct: 147 AEILKECPGQYYRYHGDWRSETQ 169
>01_01_1144 -
9066832-9066935,9067968-9068169,9068265-9068414,
9068553-9068637,9069264-9069343,9069972-9070070
Length = 239
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 352 EGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMEL 492
E +++ DY++G+ + EL RLA+ ++ G+ E I FV ++
Sbjct: 126 EPLQINVLDYVLGVADLSGELMRLAIGRISDGEVEYAKNICAFVRDI 172
>02_02_0340 + 9135846-9138377
Length = 843
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 570 SLRHTLGRRSVCANDRSSSSMPEAGVQFHH 481
+LRHT+G C + SSSS+PE HH
Sbjct: 119 ALRHTIGNCLSCFSSSSSSSVPEDANYPHH 148
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +3
Query: 417 SSGRELCDPRRLRAPPEDLQVRDGTERR----LQA-LNLKNDHLRKRFDALKYDVKKIEE 581
SSG E +RL DLQ+R E R LQA L + L +R AL+ DV +++E
Sbjct: 583 SSGEEELAIQRLEITKNDLQIRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE 642
>01_01_0611 +
4541505-4541646,4543503-4543621,4543728-4543866,
4543924-4544178,4545094-4545212
Length = 257
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 101 HYNEAGISPACGKARLLFEKAHDGYARLKDAVPPTDY 211
HYN + +P+ G ++ L DGYA L++ PP ++
Sbjct: 208 HYNVSSSAPSAGDSKPL--PGDDGYAWLEECEPPDNF 242
>11_01_0164 -
1342790-1342870,1343031-1343117,1343201-1343319,
1343405-1343641,1343984-1344044,1344360-1344752,
1345866-1346165
Length = 425
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 683 LFKNVIYLLFMFVFWSVVRIALGQQPPDAEIVDHF-LYFLYVIL*GVEAFAQMIVLQVQ 510
LF + LL +++F + + IALGQ P + + L+++ V+ + AF + LQ Q
Sbjct: 134 LFCCAVILLPVYIFTTPLLIALGQDPEISAVAGTISLWYIPVMFSYIWAFTLQMYLQAQ 192
>11_01_0144 +
1187532-1187813,1188913-1189454,1189621-1189707,
1190151-1190260,1190346-1190464,1190548-1190634,
1191554-1191853
Length = 508
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 683 LFKNVIYLLFMFVFWSVVRIALGQQPPDAEIVDHF-LYFLYVIL*GVEAFAQMIVLQVQ 510
LF + LL +++F + + IALGQ P + + L+++ V+ + AF + LQ Q
Sbjct: 128 LFCCAVILLPVYIFTTPLLIALGQDPEISAVAGTISLWYIPVMFSYIWAFMLQMYLQAQ 186
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 LCDPRRLRAPPEDL-QVRDGTERRLQALNLKNDHLRKRFDAL 554
LC R RA E + +V D +RRL+A +N+ LR++ DAL
Sbjct: 27 LCTTHR-RADYEAVARVLDARDRRLEAALAENEDLRRKCDAL 67
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 209 NRLVVQHLSVL--RIHRGPSRKVDELCHMPEKCRLHCSVLLGALWSL 75
N + + HLS+L R+ R +D L MPE C L + W++
Sbjct: 770 NSMRIPHLSILDLRVVTMEPRDLDVLARMPELCSLRLDITRRFPWTV 816
>03_05_0071 - 20491521-20492813
Length = 430
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 301 SHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSV 438
SH+ ++ G +P + EGF + D + LL SR+A V
Sbjct: 49 SHQRQMQVFGQAPDRVVEGFSEEFLDAFLTLLRRAHRHSRIAATVV 94
>06_03_0269 -
18991203-18991307,18991448-18991525,18992724-18992910,
18993096-18993265,18994228-18994306,18995006-18995220,
18995346-18995429,18995732-18995734
Length = 306
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +1
Query: 214 QVSGSLEIHDPTLLYLIALTI------WLEKGILASHETMAEILGVSPVELKEGFHLDIE 375
Q+ G+L+I +L+ + L W+ +LA T +++ G F +
Sbjct: 86 QIMGNLKIVTTGILFRLVLKRKLSNLQWMAVVLLAVGTTTSQVKGCGDAPCDSLFSAPFQ 145
Query: 376 DYLIGLLTMCSELSRLA 426
Y++G+L+ C LS LA
Sbjct: 146 GYMLGILSAC--LSALA 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,527,597
Number of Sequences: 37544
Number of extensions: 418322
Number of successful extensions: 1352
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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