Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30732
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32794| Best HMM Match : Gam (HMM E-Value=5.8)                       30   1.6  
SB_21193| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_7008| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  

>SB_32794| Best HMM Match : Gam (HMM E-Value=5.8)
          Length = 511

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 391 VQSDSLQCPNGNLLLTPLD*HLIFQPWSRVK 299
           ++SDSL+CP+ N L+   D   +F  W+ +K
Sbjct: 469 MESDSLECPSHNELIHNEDKEEVFDEWNLIK 499


>SB_21193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 391 VQSDSLQCPNGNLLLTPLD*HLIFQPWSRVK 299
           ++SDSL+CP+ N L+   D   +F  W+ +K
Sbjct: 279 MESDSLECPSHNELIHNEDKEEVFDEWNLIK 309


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = +3

Query: 396  DDVLRIVSSGRELCDPRRLRAPPEDLQVRDGTERRLQALNLKNDHLRKRFDALKYDVKKI 575
            DD   +  S    C  R+ R  P     R    R+ +     N HL+  FD L Y+ +K 
Sbjct: 2605 DDCYSVACSSTRSCKTRKAR--PTQFYPRIAFTRKFRG----NHHLQMEFDCLMYETEKY 2658

Query: 576  EEVVY 590
             E  Y
Sbjct: 2659 PEFFY 2663


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 2    NLDQEQELRETIRTICKEVDQISRE 76
            N ++ Q+LRE    ICKE +Q+ RE
Sbjct: 1308 NEEEVQQLREWYDVICKEKEQLERE 1332


>SB_7008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1

Query: 591 RRPLPLFSLRHTLGRRSVCANDRSSSSMPEAGVQFHHELGDPQGALVVAA 442
           +R   L   R  + RRSV    R+ S  P  GV  H     PQ A V A+
Sbjct: 203 QRSSALARTRRGIHRRSVRRRQRTGSGAPVTGVLLHAMETAPQSAHVAAS 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,696,581
Number of Sequences: 59808
Number of extensions: 449627
Number of successful extensions: 1407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)