Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30732
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37020.1 68415.m04540 translin family protein similar to SP|Q...    66   2e-11
At2g03780.1 68415.m00338 translin family protein similar to SP|Q...    38   0.005
At5g40480.1 68418.m04909 expressed protein ; expression supporte...    30   1.7  
At5g51795.1 68418.m06422 Kin17 DNA-binding protein-related             29   3.0  
At5g41760.1 68418.m05084 nucleotide-sugar transporter family pro...    29   3.0  
At4g27460.1 68417.m03946 CBS domain-containing protein                 29   3.0  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    29   3.0  
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar...    29   3.9  
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar...    29   3.9  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    28   5.2  

>At2g37020.1 68415.m04540 translin family protein similar to
           SP|Q62348 Translin {Mus musculus}; contains Pfam profile
           PF01997: Translin family
          Length = 238

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 34/82 (41%), Positives = 48/82 (58%)
 Frame = +1

Query: 262 IALTIWLEKGILASHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVT 441
           +A   WLE G L  H    E LG++ +E    F L+ EDYL G+  M ++L R  VN VT
Sbjct: 110 LAFMHWLETGTLLVHTEAEEKLGLNSLE----FGLETEDYLTGICFMSNDLPRYVVNRVT 165

Query: 442 RGDYERPLRISKFVMELNAGFR 507
            GDY+ P ++  F+ +L+A FR
Sbjct: 166 AGDYDCPRKVMNFLTDLHAAFR 187



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 24/39 (61%), Positives = 34/39 (87%)
 Frame = +3

Query: 510 LNLKNDHLRKRFDALKYDVKKIEEVVYDLSIRGLLPKGD 626
           LNL+ND LRK+FD++KYD++++EEV YD+ IRGL+  GD
Sbjct: 189 LNLRNDFLRKKFDSMKYDLRRVEEVYYDVKIRGLISGGD 227



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5   LDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGISPACGKARLLFEKAHDGYARL 184
           L++   LRE IR +  E++  +R     L ++H +   I     KA+         Y RL
Sbjct: 23  LEESAALREQIRAVVMEIESATRLIQANLLLVHQSRP-IPEVIEKAKEKIVDLKQYYGRL 81

Query: 185 KDAVP--PTDYFKYQDHWRFMTQ 247
            + +   P  Y++Y   WR  TQ
Sbjct: 82  AEILEECPGQYYRYHGDWRSETQ 104


>At2g03780.1 68415.m00338 translin family protein similar to
           SP|Q99598 Translin-associated protein X
           (Translin-associated factor X) {Homo sapiens}; contains
           Pfam profile PF01997: Translin family
          Length = 287

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +1

Query: 352 EGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELN 495
           E   ++I DY++GL  +  EL R+A+  ++ G+ E   RI +FV +++
Sbjct: 176 EPLQINILDYILGLADLTGELMRMAIGRISDGEIEFAQRICQFVRQIH 223


>At5g40480.1 68418.m04909 expressed protein ; expression supported by
            MPSS
          Length = 1919

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 328  LIFQPWSRVKPGFPSLAIW*ALSDKVALGHESPV 227
            +I Q     + G P+ A+  A SD VA+GHE PV
Sbjct: 1213 VICQAIGNAEVGLPATAMLVAQSDTVAVGHEMPV 1246


>At5g51795.1 68418.m06422 Kin17 DNA-binding protein-related
          Length = 347

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 301 SHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSV 438
           SH+   ++LG +P  +  G+  + E   + L+      SR+A   V
Sbjct: 65  SHQRQMQVLGQNPTRVVNGYSQEFEQTFLDLMRRSHRFSRVAATVV 110


>At5g41760.1 68418.m05084 nucleotide-sugar transporter family
           protein low similarity to SP|Q61420 CMP-sialic acid
           transporter {Mus musculus}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 340

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +1

Query: 214 QVSGSLEIHDPTLLYLIALTI------WLEKGILASHETMAEILGVSPVELKEGFHLDIE 375
           Q+ G+L+I    +L+ + L        W+  G+LA   T +++ G         F   I+
Sbjct: 107 QIMGNLKIVTTGILFRLFLKRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQ 166

Query: 376 DYLIGLLTMCSELSRLA 426
            YL+G+L+  + LS LA
Sbjct: 167 GYLLGILS--AGLSALA 181


>At4g27460.1 68417.m03946 CBS domain-containing protein 
          Length = 391

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 295 LASHETMAEILGVSPVE-LKEGFHLDIEDY-LIGLLTMCSELSRLAVNSVTRGDYERPLR 468
           L++ + MA I G +P E L +     +ED  LIGL+++   LS  + +S    + E P+R
Sbjct: 258 LSAGDLMAYIDGANPPESLVQIVRNRLEDKGLIGLMSLFDSLSSYSTSSGYSSEEEAPVR 317

Query: 469 ISKFVMELNAGFR 507
            + +   +++  R
Sbjct: 318 TTSYGRSMSSSAR 330


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 247 TLLYLIALTIWLEKGILASHETMAEILGVSPVELKEGFHLD 369
           TL++ +  T  L + +L      A IL +SP ELKEG   D
Sbjct: 432 TLVFNLKNTALLARRLLNGELEPATILNMSPTELKEGLTAD 472


>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase from Solanum tuberosum
           [SP|p14673]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 352

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 173 IHRGPSRKVDELCHMPEKCRLHCSVL--LGALWSLPE 69
           +H G + KVD L  + + C L C V   LGA W++ +
Sbjct: 128 VHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVAD 164


>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase from Solanum tuberosum
           [SP|p14673]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 381

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 173 IHRGPSRKVDELCHMPEKCRLHCSVL--LGALWSLPE 69
           +H G + KVD L  + + C L C V   LGA W++ +
Sbjct: 157 VHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVAD 193


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1219

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 432 LCDPRRLRAPPEDLQVRDGTERRLQALNLKNDHLRKRFDALKYDVKKIEEVV 587
           L D   +++ PE +Q    T RRL  LNLKN    K   +  Y +K ++E++
Sbjct: 740 LLDGTVIKSLPESIQ----TFRRLALLNLKNCKKLKHLSSDLYKLKCLQELI 787


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,362,660
Number of Sequences: 28952
Number of extensions: 325123
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)