Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30730
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    29   0.66 
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    28   1.5  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    28   1.5  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   4.7  
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        26   4.7  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   6.2  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   8.2  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +2

Query: 185 RVQQARSDAQLGVFPLHRRTRRFAYENVKGKVASRSNSTQSFDEALRDASGAT---SPPI 355
           R++  RS +    +P+   +  F + N+K  V S+   T  FD+ALR  S  T   S P+
Sbjct: 586 RLRYVRSKSPTPYYPIE--SSEFGFTNLKD-VTSKDEITDGFDKALRSNSLRTHRDSRPV 642

Query: 356 -PEHKPLP*AGH*AVTPHVTCH 418
            P  K  P   H A+T   T H
Sbjct: 643 QPLLKQRP-QLHRALTESATLH 663


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 399 LHTSHVIRY-IASPIPRPAPRGWQLYSYETKHVW 497
           +H+ H+ +  IASPIPR   R  +L SY+  + W
Sbjct: 74  MHSKHISKLPIASPIPRGLDRSGEL-SYKDNNHW 106


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 48  VWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQM 209
           +++++ E  N+G +++  S ++  T  + +   EK +  IG     +SSKL  M
Sbjct: 171 LYQDLKELYNEGFRSISVSLMHSYTYPLHEEVVEKIAKRIGFTDISLSSKLTPM 224


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 378 ERDTELSLHTSHVIRYIASPIPRPAPRGWQLYSYETKHVWPKGLIPGHKIQKKKRNVYYY 557
           ERD +  + TS   +Y  SP P    R  Q +S +++ +  +      ++QK + N    
Sbjct: 250 ERDLKKYVRTSR--QYSRSPSPDFRTRNHQFHSRDSQPITQRHTDIESRLQKMQDNAKEL 307

Query: 558 TAYRRGRYEYMGRK 599
              RR + E + +K
Sbjct: 308 DESRRKKIELLEKK 321


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 533 KKAKRLLLHSLPSWTI*IYGPEKR--VSIPF*FNINCL 640
           +  +R L++++P   + IYG  K+  + IPF  +INCL
Sbjct: 60  ESVQRNLINNVPKELLSIYGSGKQSHLYIPFPAHINCL 97


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 328 RQWRHLAPHPRAQAAALSGTLSCHSTRH 411
           R ++ + PHPR  A  L   +S   T H
Sbjct: 365 RDYKDIMPHPRPSAVLLDKPVSLDQTSH 392


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 311 DEALRDASGATSPPIPEH 364
           D A++DA GAT+P  P H
Sbjct: 394 DHAMKDACGATNPIQPTH 411


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 99  ESQVYQKTESVIKTTAEKTSSIIGGITAGVSSK 197
           ES V+ K E++ +  + +T  +  GIT  +SSK
Sbjct: 806 ESFVFNKLEAMAQLPSPRTPVLDAGITQALSSK 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,600
Number of Sequences: 5004
Number of extensions: 60003
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)