Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30730
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    31   0.91 
02_01_0286 + 1921049-1921726                                           29   2.8  
02_02_0403 - 9866122-9867231                                           29   3.7  
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154...    28   6.4  
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    28   6.4  
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605...    28   8.5  

>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 257 YENVKGKVASRSNSTQSFDEALRDASGATSPPIPEHKPLP 376
           YE VK     +++ T+S   A     G  SPP+P  +  P
Sbjct: 352 YEEVKDSPTEQTDKTKSSSNATASTEGRKSPPVPNERKDP 391


>02_01_0286 + 1921049-1921726
          Length = 225

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 143 RREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTRR 250
           RR+D    RRH G      R +   G FP+ RR RR
Sbjct: 90  RRDDRGSWRRHSGGNAIGLRQERASGGFPVKRRRRR 125


>02_02_0403 - 9866122-9867231
          Length = 369

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 289 IELDSELRRGAA*RQWRHLAPH----PRAQAAALSGTLSCHSTRHMSFAI 426
           + L SE+ R AA    R+ AP     P A AAA++  L  H  RH+ F +
Sbjct: 52  VRLPSEVGRTAAALPLRYAAPQLLHRPDAAAAAVALKLRVHGRRHLVFYV 101


>01_07_0179 -
           41814886-41815074,41815172-41815222,41815365-41815469,
           41815852-41815945,41816056-41816150,41816581-41816700,
           41816737-41816832,41817272-41817569,41817777-41817853,
           41818932-41819447
          Length = 546

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 323 RDASGATSPPIPEHKPLP*AGH*AVTPHVTCHSLYRLSHTAPGPARLA 466
           R  SG+ SPP+P+  P    G  A TP      ++R    A G  R++
Sbjct: 11  RRRSGSKSPPLPQADPASGGGSPAPTPEEEMERVFR-KFDANGDGRIS 57


>01_07_0016 -
           40476014-40476333,40476598-40476740,40476945-40479099,
           40479205-40480047,40480176-40480269,40480356-40481207,
           40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/95 (26%), Positives = 46/95 (48%)
 Frame = +2

Query: 68  GRQSGFEKRQRKPSIPKN*ICDKNDRREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTR 247
           G  S  +  +++  +P+    DK +RR +VFD      R +++ R  +  G     RR R
Sbjct: 65  GHGSLLDPSEKEVRMPEG-AADKKERRRNVFDADSSL-RWLEEERETSLPG-----RRER 117

Query: 248 RFAYENVKGKVASRSNSTQSFDEALRDASGATSPP 352
           +   + V   + SR N  +S + ++RD   + +PP
Sbjct: 118 K---KEVDRDMESRKNDRRSDNVSVRDGGDSRAPP 149


>01_06_1105 -
           34559694-34559852,34560298-34560312,34560451-34560522,
           34560695-34561549
          Length = 366

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 453 GPGAVWERRYSE*HVTCG-VTAQCPAQGSGLCSGMGGEVA 337
           GPGA+ E  YS+   + G +     +Q  G   GM G+VA
Sbjct: 220 GPGAILEPSYSDGQTSSGMIGGMSDSQTPGRKRGMSGDVA 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,601,870
Number of Sequences: 37544
Number of extensions: 402020
Number of successful extensions: 1275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)