Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30730
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)                   59   4e-09
SB_12781| Best HMM Match : Spindle_assoc (HMM E-Value=0.12)            29   2.8  
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)                  29   3.8  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        29   5.0  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   29   5.0  
SB_4157| Best HMM Match : Ribosomal_L32p (HMM E-Value=2.7)             29   5.0  
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)           28   6.6  

>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
          Length = 829

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
 Frame = +3

Query: 3   KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK-------TESVIKTTAEKTSS 161
           K  Q +DLKR+LGIT W +I E +      V++S+ Y K       T+ V+   +EKT S
Sbjct: 90  KENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQGASATKVVLVDASEKTVS 149

Query: 162 IIGGITAGVSSKLGQMRNSESFRSIE 239
            +   ++  + KLG++R S SF+S E
Sbjct: 150 AVKTASSATAKKLGEIRQSNSFQSFE 175


>SB_12781| Best HMM Match : Spindle_assoc (HMM E-Value=0.12)
          Length = 200

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 57  EITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGI--TAGVSSKLGQMRNSESFR 230
           EI    N GL +  +    Q+ +   K   EKT+ +   I  TAG+ S+L   +  ++ +
Sbjct: 62  EILRRENSGLVHQNQDLKIQRDQLRHKVE-EKTNEVERNISKTAGIRSELENTK--KALK 118

Query: 231 SIEERVGSLMKT 266
             EERV SL KT
Sbjct: 119 GSEERVSSLQKT 130


>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +2

Query: 161 DHRRHHGRRVQQARSDAQLGVFPLHRRTRRFAYENVKGKVASRSNSTQSFDEALRDASGA 340
           D   ++ R    A S   L VF  H  +R+ ++ ++   +  R  S +     +   S  
Sbjct: 362 DVSSYNSRLDLDALSAVDLSVFGTHPPSRQGSFLSLHSSILRRPGSLRRPGSMISRQSSF 421

Query: 341 TSPPIPEHKPL 373
              P PEH PL
Sbjct: 422 QETPSPEHAPL 432


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/86 (29%), Positives = 40/86 (46%)
 Frame = +3

Query: 42  ITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSE 221
           I+  K+  E  N  L  V   QV   TES +++  +KT + I      +S   G++ NS+
Sbjct: 299 ISKLKDDLESANSELGRV--GQVKSVTESQLQSDLDKTKAEIRLKNQEISKLGGRLSNSQ 356

Query: 222 SFRSIEERVGSLMKTSRVK*LLDRTR 299
           +     E  G  +K   +K L D+ R
Sbjct: 357 TLFDKSETEGLKLK-EEIKSLKDKIR 381


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 242 TRRFAYENVKGKVASRS-NSTQSFDEALRDASGATSPPIPEHK 367
           +++ +++  K K  SR  NST+   E   D S A+  P PE K
Sbjct: 19  SKKSSHKPKKSKKKSRQGNSTEKLKEQYEDISSASEEPEPERK 61


>SB_4157| Best HMM Match : Ribosomal_L32p (HMM E-Value=2.7)
          Length = 311

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 441 PRPAPRGWQLYSYETKHVWPKGLIPGHKIQKKKRNV-YYYTAYRRG 575
           PR A  GW L   ET    P G     +I+K+ R +  YY A  RG
Sbjct: 5   PRLAHFGWILNMGETDICRPSGRFVASRIEKESRPIAVYYDADDRG 50


>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
          Length = 431

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 44  HGVERDHRGRQSGFEKRQRKPSIPKN*ICDKND 142
           HG     RG Q+  +KR   P +PK+ +  K D
Sbjct: 369 HGENMIRRGSQASTQKRNMTPIVPKHVMAPKRD 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,315,972
Number of Sequences: 59808
Number of extensions: 444626
Number of successful extensions: 1347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)