Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30730
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    25   0.94 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.8  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = +3

Query: 24  LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGG-----ITAGV 188
           + RK+G +V   +    N GL  +K +  ++ TE   K   E     + G     +    
Sbjct: 29  MTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKFKLGEEFEEETVDGRKVKSVCTLD 88

Query: 189 SSKLGQMRNSESFRSIEERVGS 254
            +KL Q++  E   +IE    S
Sbjct: 89  GNKLIQVQKGEKQTTIEREFSS 110


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 473 VELPASRGRARYGRGDIAN 417
           V +P  +G   Y RG++AN
Sbjct: 61  VRIPKEQGFLSYWRGNLAN 79


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 473 VELPASRGRARYGRGDIAN 417
           V +P  +G   Y RG++AN
Sbjct: 61  VRIPKEQGFLSYWRGNLAN 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,476
Number of Sequences: 438
Number of extensions: 4696
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)