Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30730
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59453.1 68414.m06679 transcription factor-related weak simil...    31   0.76 
At4g02210.1 68417.m00298 expressed protein                             31   1.0  
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    29   3.1  
At4g26050.1 68417.m03750 leucine-rich repeat family protein cont...    29   3.1  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    29   3.1  
At4g10270.1 68417.m01688 wound-responsive family protein similar...    29   4.1  
At3g51790.1 68416.m05679 cytochrome c biogenesis protein CcmE fa...    29   4.1  
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati...    28   5.4  
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    28   5.4  
At3g47800.1 68416.m05207 aldose 1-epimerase family protein simil...    28   7.1  
At1g18620.1 68414.m02321 expressed protein                             28   7.1  

>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 54   KEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFR 230
            K  ++D N+ ++N   S   +K  S++KT  E   SII      ++S      NSESF+
Sbjct: 907  KSNSKDKNKAVENSPSSSKKRKRASLVKTKGEGVKSIIVDGQKVLNSDAIDASNSESFQ 965


>At4g02210.1 68417.m00298 expressed protein
          Length = 439

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 239 RTRRFAYENVKGKVASRSNSTQSFDEALRDASGATSPPIPEHKPL 373
           R+  FA++N +  V + +N  Q + +A RDA    + PIP +K L
Sbjct: 256 RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDL 300


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
           similar to DNA helicase HEL308 [Homo sapiens]
           GI:19110782; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 147 EKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGS 254
           EK S ++G  T GVSS++       +FR I   VG+
Sbjct: 802 EKPSEVLGDATLGVSSEINLTSRLPNFRPIGTAVGT 837


>At4g26050.1 68417.m03750 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
          Length = 383

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 66  EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA-GVSSKLGQMRNSE 221
           E V QGL+ +K+    + TES  KT  +K S  IG +   G+SS  G+    E
Sbjct: 286 EVVEQGLEALKQYMSEKMTESYKKTPTKKKSWGIGKLVKYGLSSSPGRSTGRE 338


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
           Membrane-associated protein Hem (Dhem-2)
           (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
           similarity to Nck-associated protein 1 (NAP 1)
           (p125Nap1) (Membrane-associated protein HEM-2)
           (Swiss-Prot:P55161) [Rattus norvegicus]
          Length = 1339

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 190 DTPAVMPPMIEDVFSAVVFITDSVFWY 110
           D P+++ P I+ VFSA+      V WY
Sbjct: 417 DQPSLLAPNIQMVFSALALAQSEVLWY 443


>At4g10270.1 68417.m01688 wound-responsive family protein similar to
           wound induced protein (GI:19320) [Lycopersicon
           esculentum]
          Length = 90

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 24  LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSS 161
           LK +LG+  W  I   VNQ L+N   S    K  S    +A  TSS
Sbjct: 20  LKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSS 65


>At3g51790.1 68416.m05679 cytochrome c biogenesis protein CcmE
           family contains Pfam profile: PF03100 cytochrome c-type
           biogenesis protein CcmE
          Length = 256

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 413 CHSLYRLSHTAPGPARLATLLIRNETRLA*RSDTRP*NPKKKAKRLLLHSLPSWT 577
           C   + L+  +P P+RL++L       +A R  TRP      AK   + +   WT
Sbjct: 32  CPIFHSLTTASPDPSRLSSLTFLRSLSIARRGPTRPKKIDIGAKARQMQNRRLWT 86


>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
           similar to UDP-glucose glucosyltransferase GI:3928543
           from [Arabidopsis thaliana]
          Length = 489

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/58 (25%), Positives = 33/58 (56%)
 Frame = +3

Query: 3   KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGI 176
           +I ++S++ RKLG+ +W+E TE ++      +++ +Y    S+   T+E+      G+
Sbjct: 265 EIDKNSEI-RKLGLNLWEEETESLDWLDTKAEKAVIYVNFGSLTVLTSEQILEFAWGL 321


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 50  VERDHRGRQS--GFEKRQRKPSIPKN*ICDKNDRRE-DVFDHRRHHGRRVQQARSDAQLG 220
           +ER HR R+     E   R+    +    DK  RRE D  DHR H   + ++   D + G
Sbjct: 437 LERKHRERKERESREDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERRRERDDRHG 496

Query: 221 VFPLHRRTRR 250
               H R  R
Sbjct: 497 REARHERRDR 506


>At3g47800.1 68416.m05207 aldose 1-epimerase family protein similar
           to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
           from [Acinetobacter calcoaceticus]; contains Pfam
           profile PF01263 Aldose 1-epimerase
          Length = 358

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 417 IRYIASPIPRPAPRGWQLYSYETKHVWPKGLIPGHKIQ 530
           ++  A P+ +P P    L++Y   H    G I  HKIQ
Sbjct: 174 VKMEAKPLNKPTPINLALHTYWNLHSHNSGNILSHKIQ 211


>At1g18620.1 68414.m02321 expressed protein
          Length = 978

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/78 (26%), Positives = 31/78 (39%)
 Frame = +1

Query: 307 LRRGAA*RQWRHLAPHPRAQAAALSGTLSCHSTRHMSFAISPLPYRARPREAGNSTHTKR 486
           LR  +  R  R     PR+     + + S    R   F + PL     P E      T+R
Sbjct: 314 LRENSLNRSLRFSPSSPRSLGKDPAASSSSPRWRSSEFVMKPLSSLRYPIEPAPWKQTER 373

Query: 487 NTFGLKV*YQAIKSKKKS 540
           N F  K   +++KS  +S
Sbjct: 374 NRFSQKQACRSVKSLSQS 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,948,422
Number of Sequences: 28952
Number of extensions: 316825
Number of successful extensions: 927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)