Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30729
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 64 5e-11
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 64 7e-11
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 41 7e-04
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 35 0.049
07_01_0478 - 3605306-3605614,3605766-3605906 29 1.8
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522... 29 3.2
02_02_0682 - 12923103-12923747,12924607-12924870,12924953-129252... 29 3.2
12_01_1057 - 10899871-10899961,10900255-10900411,10901420-109014... 28 4.2
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 28 4.2
11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548... 27 7.4
10_02_0086 - 5112095-5112185,5112487-5112599,5113325-5113431,511... 27 9.8
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 64.5 bits (150), Expect = 5e-11
Identities = 28/49 (57%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Frame = +3
Query: 78 ARGRSVEETLRLVQAFQFT-DKHGEVCPANWRPGAKTIKPDTKAAQEYF 221
A GRSV+ET+R +QA Q+ D EVCPA W+PG K++KPD K ++EYF
Sbjct: 278 AIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYF 326
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 1 ETGIPFRGLFIIDDKQNLRQITINDLPV 84
+ GI RGLFIID + ++ TIN+L +
Sbjct: 252 DQGIALRGLFIIDKEGVIQHSTINNLAI 279
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 64.1 bits (149), Expect = 7e-11
Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Frame = +3
Query: 78 ARGRSVEETLRLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 221
A GRSV+ETLR +QA Q+ ++ EVCPA W+PG K++KPD K ++EYF
Sbjct: 104 AIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKDSKEYF 152
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 7 GIPFRGLFIIDDKQNLRQITINDLPV 84
GI RGLFIID + ++ TIN+L +
Sbjct: 80 GIALRGLFIIDKEGVIQHSTINNLAI 105
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 40.7 bits (91), Expect = 7e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 84 GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKP 194
GR+++E +R V A Q KH P NW+PG + + P
Sbjct: 185 GRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVVIP 221
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 34.7 bits (76), Expect = 0.049
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 84 GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 215
GR++ E LR A +H P NW+PG + + P + +E
Sbjct: 150 GRNMAEVLRATDALLTAARHRVATPVNWKPGERVVIPPGVSDEE 193
>07_01_0478 - 3605306-3605614,3605766-3605906
Length = 149
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 DGHSLPRTLHHRR-QAEPQADHDQRPARGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 179
DGH LPRTL HR QA + + ++ + L+L+ + K P
Sbjct: 7 DGHGLPRTLSHRELQAMCKRNDGHANMTNATMTDALQLLPSVDGIHKIDTTALCLPTPSR 66
Query: 180 KTIKPDTKAA 209
T+K KAA
Sbjct: 67 LTMKSALKAA 76
>03_05_0554 -
25551220-25551310,25551562-25551695,25552115-25552221,
25552359-25552437,25552524-25552613,25552790-25553044,
25553388-25553537,25553677-25553976
Length = 401
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 220 KYSWAALVSGLMVLAPGLQ 164
KY W A+ G MVL PGL+
Sbjct: 370 KYRWKAIKGGTMVLGPGLR 388
>02_02_0682 -
12923103-12923747,12924607-12924870,12924953-12925219,
12925301-12925529,12925614-12926295,12926409-12926682,
12926822-12927347,12927460-12927698,12927799-12927896,
12928017-12928020,12928657-12928832,12929593-12929647,
12930787-12931047
Length = 1239
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 289 VLFEIVYSIRVMLVWCRV*LVSPK-YSWAALVSGLMVLAPGLQLAGHTSPCLS 134
V+F IV+ + VW L+ K Y+ +++ LM + G G +SPCL+
Sbjct: 237 VMF-IVFCSYGLAVWYGAKLIIEKGYTGGYIINVLMAIMSGAMALGQSSPCLN 288
>12_01_1057 -
10899871-10899961,10900255-10900411,10901420-10901498,
10901618-10901707,10903232-10903486,10903674-10903689,
10903907-10903940,10905653-10905884
Length = 317
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 220 KYSWAALVSGLMVLAPGLQ 164
KY W + G MVL PGLQ
Sbjct: 286 KYRWKVIKGGKMVLCPGLQ 304
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 27 LHHRRQAEPQADHDQRPARGRSVEETLRLVQAFQFTDKHG 146
+HHR + E DH R R R + ET ++Q Q +K+G
Sbjct: 141 IHHRWKMESILDHFDRKGRDRMLRETGVVIQQ-QAEEKNG 179
>11_04_0291 -
15851647-15852252,15853995-15854136,15854666-15854881,
15854957-15855052,15855147-15855259,15856516-15856727,
15856842-15856939,15857066-15857186,15857291-15857508,
15857657-15857837,15857919-15858207,15858303-15858367,
15858480-15858591
Length = 822
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 84 GRSVEETLRLVQAFQFTDKHGEV--CPAN 164
G S+EE L LV F D HGE+ C +N
Sbjct: 559 GGSMEEMLNLVALFDKWDDHGEIGFCSSN 587
>10_02_0086 -
5112095-5112185,5112487-5112599,5113325-5113431,
5113782-5113860,5114000-5114089,5114628-5114882,
5117025-5117174,5117634-5117933
Length = 394
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 232 LVSPKYSWAALVSGLMVLAPGLQ 164
L S K SW A+ G M L+PGL+
Sbjct: 359 LPSHKSSWKAIKGGRMALSPGLR 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,152,164
Number of Sequences: 37544
Number of extensions: 203407
Number of successful extensions: 590
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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