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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30729
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021...    64   5e-11
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700...    64   7e-11
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    41   7e-04
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080     35   0.049
07_01_0478 - 3605306-3605614,3605766-3605906                           29   1.8  
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522...    29   3.2  
02_02_0682 - 12923103-12923747,12924607-12924870,12924953-129252...    29   3.2  
12_01_1057 - 10899871-10899961,10900255-10900411,10901420-109014...    28   4.2  
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    28   4.2  
11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548...    27   7.4  
10_02_0086 - 5112095-5112185,5112487-5112599,5113325-5113431,511...    27   9.8  

>02_04_0116 +
           19901546-19901737,19901825-19901899,19902034-19902115,
           19902219-19902298,19903279-19903482,19903625-19903750,
           19903872-19903985,19904802-19904918
          Length = 329

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 28/49 (57%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
 Frame = +3

Query: 78  ARGRSVEETLRLVQAFQFT-DKHGEVCPANWRPGAKTIKPDTKAAQEYF 221
           A GRSV+ET+R +QA Q+  D   EVCPA W+PG K++KPD K ++EYF
Sbjct: 278 AIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYF 326



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPV 84
           + GI  RGLFIID +  ++  TIN+L +
Sbjct: 252 DQGIALRGLFIIDKEGVIQHSTINNLAI 279


>04_03_0889 +
           20568984-20569037,20569271-20569345,20569981-20570088,
           20572066-20572179,20572393-20572509
          Length = 155

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
 Frame = +3

Query: 78  ARGRSVEETLRLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 221
           A GRSV+ETLR +QA Q+  ++  EVCPA W+PG K++KPD K ++EYF
Sbjct: 104 AIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKDSKEYF 152



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 7   GIPFRGLFIIDDKQNLRQITINDLPV 84
           GI  RGLFIID +  ++  TIN+L +
Sbjct: 80  GIALRGLFIIDKEGVIQHSTINNLAI 105


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKP 194
           GR+++E +R V A Q   KH    P NW+PG + + P
Sbjct: 185 GRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVVIP 221


>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
          Length = 220

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 215
           GR++ E LR   A     +H    P NW+PG + + P   + +E
Sbjct: 150 GRNMAEVLRATDALLTAARHRVATPVNWKPGERVVIPPGVSDEE 193


>07_01_0478 - 3605306-3605614,3605766-3605906
          Length = 149

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 3   DGHSLPRTLHHRR-QAEPQADHDQRPARGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 179
           DGH LPRTL HR  QA  + +         ++ + L+L+ +     K          P  
Sbjct: 7   DGHGLPRTLSHRELQAMCKRNDGHANMTNATMTDALQLLPSVDGIHKIDTTALCLPTPSR 66

Query: 180 KTIKPDTKAA 209
            T+K   KAA
Sbjct: 67  LTMKSALKAA 76


>03_05_0554 -
           25551220-25551310,25551562-25551695,25552115-25552221,
           25552359-25552437,25552524-25552613,25552790-25553044,
           25553388-25553537,25553677-25553976
          Length = 401

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 220 KYSWAALVSGLMVLAPGLQ 164
           KY W A+  G MVL PGL+
Sbjct: 370 KYRWKAIKGGTMVLGPGLR 388


>02_02_0682 -
           12923103-12923747,12924607-12924870,12924953-12925219,
           12925301-12925529,12925614-12926295,12926409-12926682,
           12926822-12927347,12927460-12927698,12927799-12927896,
           12928017-12928020,12928657-12928832,12929593-12929647,
           12930787-12931047
          Length = 1239

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 289 VLFEIVYSIRVMLVWCRV*LVSPK-YSWAALVSGLMVLAPGLQLAGHTSPCLS 134
           V+F IV+    + VW    L+  K Y+   +++ LM +  G    G +SPCL+
Sbjct: 237 VMF-IVFCSYGLAVWYGAKLIIEKGYTGGYIINVLMAIMSGAMALGQSSPCLN 288


>12_01_1057 -
           10899871-10899961,10900255-10900411,10901420-10901498,
           10901618-10901707,10903232-10903486,10903674-10903689,
           10903907-10903940,10905653-10905884
          Length = 317

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 220 KYSWAALVSGLMVLAPGLQ 164
           KY W  +  G MVL PGLQ
Sbjct: 286 KYRWKVIKGGKMVLCPGLQ 304


>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 27  LHHRRQAEPQADHDQRPARGRSVEETLRLVQAFQFTDKHG 146
           +HHR + E   DH  R  R R + ET  ++Q  Q  +K+G
Sbjct: 141 IHHRWKMESILDHFDRKGRDRMLRETGVVIQQ-QAEEKNG 179


>11_04_0291 -
           15851647-15852252,15853995-15854136,15854666-15854881,
           15854957-15855052,15855147-15855259,15856516-15856727,
           15856842-15856939,15857066-15857186,15857291-15857508,
           15857657-15857837,15857919-15858207,15858303-15858367,
           15858480-15858591
          Length = 822

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKHGEV--CPAN 164
           G S+EE L LV  F   D HGE+  C +N
Sbjct: 559 GGSMEEMLNLVALFDKWDDHGEIGFCSSN 587


>10_02_0086 -
           5112095-5112185,5112487-5112599,5113325-5113431,
           5113782-5113860,5114000-5114089,5114628-5114882,
           5117025-5117174,5117634-5117933
          Length = 394

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 232 LVSPKYSWAALVSGLMVLAPGLQ 164
           L S K SW A+  G M L+PGL+
Sbjct: 359 LPSHKSSWKAIKGGRMALSPGLR 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,152,164
Number of Sequences: 37544
Number of extensions: 203407
Number of successful extensions: 590
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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