Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30729
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   4e-15
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              72   3e-13
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                    72   3e-13
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                28   5.7  

>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 33/46 (71%), Positives = 38/46 (82%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 221
           GRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG  TI PD    ++YF
Sbjct: 2   GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 30/34 (88%), Positives = 32/34 (94%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 185
           GRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 64  GRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPV 84
           + G+  RGLFIIDDK  LRQITINDLPV
Sbjct: 36  DQGVALRGLFIIDDKGILRQITINDLPV 63


>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 30/34 (88%), Positives = 32/34 (94%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 185
           GRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 195 GRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 228



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPV 84
           + G+  RGLFIIDDK  LRQITINDLPV
Sbjct: 167 DQGVALRGLFIIDDKGILRQITINDLPV 194


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/20 (90%), Positives = 20/20 (100%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKH 143
           GRSV+ETLRLVQAFQ+TDKH
Sbjct: 156 GRSVDETLRLVQAFQYTDKH 175



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +1

Query: 22  GLFIIDDKQNLRQITINDLPV 84
           GLFIIDDK  LRQIT+NDLPV
Sbjct: 135 GLFIIDDKGVLRQITMNDLPV 155


>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 143 RRGVPRQLEARRQDHQARHQGRPGVLRR 226
           RR +PR LE +RQ  Q R   R  +LRR
Sbjct: 299 RRRIPRLLEQQRQIRQQRLPERLAILRR 326


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAK-TIKPDTKAAQE 215
           GR+ +E LR++ + Q T       P +W+ G    + P  K  +E
Sbjct: 89  GRNFDEILRVIDSLQLTATKKVATPVDWKLGGDCMVIPSIKPEEE 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,507
Number of Sequences: 59808
Number of extensions: 252184
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)