Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30729
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.2  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   8.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.2  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 167 EARRQDHQARHQGRPGVLRRHQLDTTPHQ 253
           + ++Q   A  Q +PG+  R Q     HQ
Sbjct: 205 QQQQQSQAASQQSQPGMHPRQQQQAQQHQ 233


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 128 LEGLHQPQGLLHRPPTGRS 72
           L GLH   GL    PTG S
Sbjct: 137 LHGLHGLHGLSSSAPTGSS 155


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 27  LHHRRQAEPQADHDQRPARGRSVEE 101
           LHH +   PQA    +P + +  ++
Sbjct: 814 LHHHQSTHPQAQAQAQPQQQQQQQQ 838


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 463 EVQIRSIH*ICNFEKGISHK 404
           ++Q+R +  IC  E GI  +
Sbjct: 23  KIQLRDVQEICKAESGIDQQ 42


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 233 LDTTPHQHHSN 265
           +  TPH HHS+
Sbjct: 426 IHATPHHHHSH 436


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 292 ISENVKCSGIEKKTDY 339
           I +N++C G+   +DY
Sbjct: 139 IQKNLQCCGVHSLSDY 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,039
Number of Sequences: 438
Number of extensions: 2296
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)