BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30729 (547 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat... 63 1e-10 At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)... 63 1e-10 At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport... 29 2.7 At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 28 3.5 At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 28 3.5 At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 27 6.2 At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138... 27 8.2 >At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative very strong similarity to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family Length = 273 Score = 63.3 bits (147), Expect = 1e-10 Identities = 26/47 (55%), Positives = 37/47 (78%), Gaps = 1/47 (2%) Frame = +3 Query: 84 GRSVEETLRLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 221 GRSV+ET+R +QA Q+ ++ EVCPA W+PG K++KPD K ++EYF Sbjct: 224 GRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYF 270 Score = 29.1 bits (62), Expect = 2.0 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 1 ETGIPFRGLFIIDDKQNLRQITINDLPV 84 + GI RGLFIID + ++ TIN+L + Sbjct: 196 DQGIALRGLFIIDKEGVIQHSTINNLGI 223 >At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1) identical to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family Length = 266 Score = 62.9 bits (146), Expect = 1e-10 Identities = 26/47 (55%), Positives = 37/47 (78%), Gaps = 1/47 (2%) Frame = +3 Query: 84 GRSVEETLRLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 221 GRSV+ET+R +QA Q+ ++ EVCPA W+PG K++KPD K ++EYF Sbjct: 217 GRSVDETMRTLQALQYIQENPDEVCPAGWKPGEKSMKPDPKLSKEYF 263 Score = 29.1 bits (62), Expect = 2.0 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 1 ETGIPFRGLFIIDDKQNLRQITINDLPV 84 + GI RGLFIID + ++ TIN+L + Sbjct: 189 DQGIALRGLFIIDKEGVIQHSTINNLGI 216 >At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter, putative similar to multidrug-resistant protein CjMDR1 [Coptis japonica] GI:14715462, MDR-like p-glycoprotein [Arabidopsis thaliana] GI:24324262; contains Pfam profiles PF00005: ABC transporter, PF00664: ABC transporter transmembrane region Length = 1286 Score = 28.7 bits (61), Expect = 2.7 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = -1 Query: 286 LFEIVYSIRVMLVWCRV*LVSPK-YSWAALVSGLMVLAPGLQLAGHTSPCLS 134 LF +V+ + VW L+ K Y+ +++ ++ + G G TSPCLS Sbjct: 294 LFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSPCLS 345 >At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) contains seven G-protein beta WD-40 repeats; beta transducin-like protein, Podospora anserina, gb:L28125; contains Pfam profiles PF04503: Single-stranded DNA binding protein, SSDP; PF00400:WD domain, G-beta repeat; identical to cDNA LEUNIG (LEUNIG) GI:11141604 Length = 931 Score = 28.3 bits (60), Expect = 3.5 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +2 Query: 131 HGQARRGVPRQLEARRQDHQARHQGRPGVLRRHQLDTTPHQ 253 H Q ++ +Q + ++Q Q +HQ +P ++ Q T HQ Sbjct: 134 HHQQQQQQQQQQQQQQQQQQQQHQNQPPSQQQQQQSTPQHQ 174 >At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative identical to peroxiredoxin (Rehydrin homolog) [Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family Length = 216 Score = 28.3 bits (60), Expect = 3.5 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +3 Query: 84 GRSVEETLRLVQAFQFTDKHGE--VCPANWRP 173 GR+++E LR + + KH P NW+P Sbjct: 144 GRNMDEVLRALDSLLMASKHNNKIATPVNWKP 175 >At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam profile PF05182: Fip1 motif Length = 1192 Score = 27.5 bits (58), Expect = 6.2 Identities = 13/43 (30%), Positives = 18/43 (41%) Frame = +2 Query: 137 QARRGVPRQLEARRQDHQARHQGRPGVLRRHQLDTTPHQHHSN 265 +AR G R + Q +H RP R+ + PHQ N Sbjct: 616 KARSGSHRDFQQEEDVIQDKHSSRPANNRKQYDNNAPHQSRKN 658 >At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'auxin-independent growth promoter protein -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497. Length = 656 Score = 27.1 bits (57), Expect = 8.2 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 168 RPGAKTIKPDTKAAQEYFGDTN*TRHHTNITLIEYTISKRTHL 296 RP ++T + D K QE F T +H N +T+ R HL Sbjct: 504 RPSSRTYRLDRKVIQELFNITREDMYHPN---RNWTLRVRKHL 543 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,972,369 Number of Sequences: 28952 Number of extensions: 167965 Number of successful extensions: 426 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 424 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1023490624 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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