Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30729
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat...    63   1e-10
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)...    63   1e-10
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport...    29   2.7  
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co...    28   3.5  
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati...    28   3.5  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    27   6.2  
At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138...    27   8.2  

>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
           very strong similarity to SP|Q96291 2-cys peroxiredoxin
           BAS1, chloroplast precursor {Arabidopsis thaliana};
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 273

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/47 (55%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 221
           GRSV+ET+R +QA Q+  ++  EVCPA W+PG K++KPD K ++EYF
Sbjct: 224 GRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYF 270



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPV 84
           + GI  RGLFIID +  ++  TIN+L +
Sbjct: 196 DQGIALRGLFIIDKEGVIQHSTINNLGI 223


>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
           identical to SP|Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 266

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 26/47 (55%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 221
           GRSV+ET+R +QA Q+  ++  EVCPA W+PG K++KPD K ++EYF
Sbjct: 217 GRSVDETMRTLQALQYIQENPDEVCPAGWKPGEKSMKPDPKLSKEYF 263



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPV 84
           + GI  RGLFIID +  ++  TIN+L +
Sbjct: 189 DQGIALRGLFIIDKEGVIQHSTINNLGI 216


>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
           putative similar to multidrug-resistant protein CjMDR1
           [Coptis japonica] GI:14715462, MDR-like p-glycoprotein
           [Arabidopsis thaliana] GI:24324262; contains Pfam
           profiles PF00005: ABC transporter, PF00664: ABC
           transporter transmembrane region
          Length = 1286

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 286 LFEIVYSIRVMLVWCRV*LVSPK-YSWAALVSGLMVLAPGLQLAGHTSPCLS 134
           LF +V+    + VW    L+  K Y+   +++ ++ +  G    G TSPCLS
Sbjct: 294 LFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSPCLS 345


>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
           contains seven G-protein beta WD-40 repeats; beta
           transducin-like protein, Podospora anserina, gb:L28125;
           contains Pfam profiles PF04503:  Single-stranded DNA
           binding protein, SSDP; PF00400:WD domain, G-beta repeat;
           identical to cDNA LEUNIG (LEUNIG) GI:11141604
          Length = 931

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 131 HGQARRGVPRQLEARRQDHQARHQGRPGVLRRHQLDTTPHQ 253
           H Q ++   +Q + ++Q  Q +HQ +P   ++ Q  T  HQ
Sbjct: 134 HHQQQQQQQQQQQQQQQQQQQQHQNQPPSQQQQQQSTPQHQ 174


>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
           identical to peroxiredoxin (Rehydrin homolog)
           [Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
           profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
           and thiol-specific antioxidant) family
          Length = 216

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 84  GRSVEETLRLVQAFQFTDKHGE--VCPANWRP 173
           GR+++E LR + +     KH      P NW+P
Sbjct: 144 GRNMDEVLRALDSLLMASKHNNKIATPVNWKP 175


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 1192

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 137 QARRGVPRQLEARRQDHQARHQGRPGVLRRHQLDTTPHQHHSN 265
           +AR G  R  +      Q +H  RP   R+   +  PHQ   N
Sbjct: 616 KARSGSHRDFQQEEDVIQDKHSSRPANNRKQYDNNAPHQSRKN 658


>At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;  previously annotated as
           'auxin-independent growth promoter protein -related'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
          Length = 656

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 168 RPGAKTIKPDTKAAQEYFGDTN*TRHHTNITLIEYTISKRTHL 296
           RP ++T + D K  QE F  T    +H N     +T+  R HL
Sbjct: 504 RPSSRTYRLDRKVIQELFNITREDMYHPN---RNWTLRVRKHL 543


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,972,369
Number of Sequences: 28952
Number of extensions: 167965
Number of successful extensions: 426
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)