Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30727
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 42 6e-04
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 39 0.003
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 39 0.004
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.054
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 34 0.13
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 33 0.17
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.51
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 30 1.5
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 3.6
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 3.6
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 29 4.7
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15) 28 8.3
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 28 8.3
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = -3
Query: 619 ELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
ELFSEFG +K + VHYD SGRS GTA+VVF R+ DA
Sbjct: 1 ELFSEFGQVKRSCVHYDASGRSHGTAEVVFVRREDA 36
Score = 34.7 bits (76), Expect = 0.072
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDI 623
I+TG +KL +SNLDFGVSDSDI
Sbjct: 225 ISTG-SKLSISNLDFGVSDSDI 245
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L VSNL F +S+I+ELFS+ G++K + +R+G+ G V +E+++ A
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSA 224
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVR 506
GPT+L V +L F ++++ +K +F FG + S + YD + RS G V F R+A+A +
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQF-REAEAAK 297
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -3
Query: 685 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSG 560
++GP +L V+N+ F D+D++++F FG++ + Y+ G
Sbjct: 64 SSGPKRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERG 105
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
T++ +SNL VS DI+ELF G+LKS + G A+VV+ K DAV
Sbjct: 16 TRVTISNLHPAVSRQDIEELFGAIGVLKSCKM------LRAGMAEVVYTTKEDAV 64
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
T++ +SNL VS DI+ELF G+LKS + G A+VV+ K DAV
Sbjct: 221 TRVTISNLHPAVSRQDIEELFGAIGVLKSCKM------LRAGMAEVVYTTKEDAV 269
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = -3
Query: 682 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL 503
T L V NLD V++ +++ FS+FG ++ A V D GRS G V F RK +A
Sbjct: 123 THAAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKGHGIVEFSRKNNAHNA 182
Query: 502 *NSITE 485
I+E
Sbjct: 183 MQKISE 188
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL + NL+F + +I++ F EFG+ K + SGRS G V+ + AD +
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFGVEKVDILRDKESGRSRGFGFVLLQ-SADQI 62
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 35.1 bits (77), Expect = 0.054
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSG---RSLGTADVVFERKADAVR 506
++L++ NL F +++ +KE FS FG + ASV + G R +G V F DA +
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAK 305
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 34.7 bits (76), Expect = 0.072
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVRL 503
G T L V NL + + D+K++F ++G L + DR + S G A V F K DA
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDA 73
Query: 502 *NSITECHLMDEQ*IY 455
+ + LM E+ ++
Sbjct: 74 MDCMDATCLMAEKFVF 89
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVR 506
L V L+ +D D++ +FS FG + S V D ++G SL A + FE+ D R
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCER 176
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -3
Query: 685 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR-SLGTADVVF 530
T PTKL V++L V+ ++E+FS +G +K+ + DR+ S G A V +
Sbjct: 1153 TPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEY 1205
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADA 512
T L+++ + +S DIK++F G + S + DR +G+SLG A V ++ DA
Sbjct: 27 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDA 81
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 557
K+ + L FG ++ D+KE FS +G+++ Y G+
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMVEVKKAEYRERGQ 240
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 661 VSNLDFGVSDSDIKELFSEFGIL-KSASVHYDRSGRSLGTADVVFERKADA 512
+ NL ++ I + F F +L ++ +HY GRS G A + F +DA
Sbjct: 549 IRNLPSSITADQILDFFYGFNVLPETIKIHYLSPGRSSGDAMITFPTSSDA 599
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
T + V N + D +KE+ +E G + S V D G+S G V FE +A
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEA 162
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 464 MNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKRGGGGIRNQ 333
M I++ S I+TL+P N G+ T RNNP+ G+R Q
Sbjct: 1 MTIRIMISMIDTLQPAGENN--GSIPVITSRNNPRTRSSGVRRQ 42
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGIL 593
++ + NL GV D+D+ E+FS++G +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLG 548
+ V N+ + S+ +KE+FSE G + S + +DR +G+ G
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKG 67
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL 503
TKL V + + D +++ F++FG ++ A V DR + V +DA L
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAEL 66
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 661 VSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVR 506
V+NL +SD++ELF G + + D+ + +S G A + F + DA R
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAAR 237
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 507 LTASAFLSNTTS--AVPKDLPDRS*CTDALLRMPNSENSSFISESDTPKSK 653
LT ++ + TTS A PK PD + + A PN+ SF+ + PK K
Sbjct: 414 LTQNSNTTTTTSTIATPKT-PDTTAASSADTSSPNAPTPSFVQSNSQPKPK 463
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF 530
L V NL+ G+S D++ F +FG++ + G+ A V F
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKF 284
>SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)
Length = 987
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -2
Query: 674 YQAACIQFGLWSIRFRY--KGTIFGIWHPQKCICT 576
+++ C QFG S RY KG++ IW P+K I +
Sbjct: 58 FESECYQFGEGSGLKRYLIKGSVPTIWKPRKTIAS 92
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 661 VSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF 530
+ L V+++ + ELF++FG +K + D SG+S + V F
Sbjct: 528 IGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHF 571
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,200,201
Number of Sequences: 59808
Number of extensions: 290020
Number of successful extensions: 700
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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