Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30727
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 44 8e-05
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 44 8e-05
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 3e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 42 3e-04
Z68507-6|CAA92829.1| 240|Caenorhabditis elegans Hypothetical pr... 40 0.001
AF038605-5|AAB92019.1| 211|Caenorhabditis elegans Hypothetical ... 40 0.001
Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 39 0.004
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 39 0.004
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 39 0.004
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 39 0.004
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 39 0.004
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 39 0.004
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 39 0.004
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 38 0.007
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 38 0.007
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 36 0.021
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 34 0.084
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 33 0.26
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 33 0.26
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 33 0.26
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 33 0.26
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 32 0.45
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 32 0.45
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 32 0.45
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 31 0.59
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 31 0.78
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 31 1.0
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 31 1.0
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 31 1.0
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 31 1.0
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 30 1.8
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 29 3.2
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 29 3.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 3.2
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 29 4.2
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 29 4.2
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 29 4.2
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 4.2
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 28 7.3
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
GP +L VSN+ F D D+K +F +FG++ + ++ G S G V ER DA R
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG-SKGFGFVTMERPQDAER 207
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
GP +L VSN+ F D D+K +F +FG++ + ++ G S G V ER DA R
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG-SKGFGFVTMERPQDAER 207
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L V N++ ++D +++ FS FG + SA V D +GRS G V FE+ +A
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEA 396
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF 530
T + V N + + +FS+FG + SA V D G+ G V F
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAF 285
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L V N++ ++D +++ FS FG + SA V D +GRS G V FE+ +A
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEA 396
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF 530
T + V N + + +FS+FG + SA V D G+ G V F
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAF 285
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L V NLD V D +K+ F +G + SA V D +GRS G V FE+ +A
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEA 370
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L V NLD V D +K+ F +G + SA V D +GRS G V FE+ +A
Sbjct: 259 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEA 310
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L V NLD V D +K+ F +G + SA V D +GRS G V FE+ +A
Sbjct: 256 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEA 307
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L V NLD V D +K+ F +G + SA V D +GRS G V FE+ +A
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEA 370
>Z68507-6|CAA92829.1| 240|Caenorhabditis elegans Hypothetical
protein M18.7a protein.
Length = 240
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = -3
Query: 661 VSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL 503
+SNL V SD++ELF ++ L S SV+++ G SLGT D+ K DA RL
Sbjct: 78 ISNLAPTVISSDLEELFGDYR-LSSVSVNFNEHGDSLGTGDISL-TKRDAERL 128
>AF038605-5|AAB92019.1| 211|Caenorhabditis elegans Hypothetical
protein C02B10.4 protein.
Length = 211
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVV 533
I TGP+ L++ NL V+ D++ELF ++ + +HY +G S G AD++
Sbjct: 88 IHTGPSTLIIKNLATTVTQEDLEELFEQYE-PELVQLHYGPTGESNGCADLI 138
>Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical
protein F23B2.6 protein.
Length = 227
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL 503
++ +SNL V SD++ELF F + K SV+++ +G + GT D+ +K DA RL
Sbjct: 81 RINISNLAETVISSDLQELFGAFNLHK-VSVNFNENGGAAGTGDITL-KKYDADRL 134
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF-ERKAD 515
++ +SNL V D+++LF+EF I ++ SV+++ G+ +GT DV +R AD
Sbjct: 73 RINLSNLAHTVHSGDLRQLFAEFKI-RNVSVNFNEHGKPVGTGDVTLPKRHAD 124
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = -3
Query: 685 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
T +K+ V N+ F +D ++K LFS+FG + S + G+ G A V F+ +A A
Sbjct: 679 TLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASA 736
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL + L ++ +++E+F++FG ++ SV D+ G+S G A V F ++ AV
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAV 196
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL + L ++ +++E+F++FG ++ SV D+ G+S G A V F ++ AV
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAV 196
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL + L ++ +++E+F++FG ++ SV D+ G+S G A V F ++ AV
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAV 196
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL + L ++ +++E+F++FG ++ SV D+ G+S G A V F ++ AV
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAV 196
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL + L ++ +++E+F++FG ++ SV D+ G+S G A V F ++ AV
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAV 196
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL + L ++ +++E+F++FG ++ SV D+ G+S G A V F ++ AV
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAV 196
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
GPT +LV NL + + I+++F FG ++ + D + + G A + F DA
Sbjct: 125 GPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDA 180
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
GPT +LV NL + + I+++F FG ++ + D + + G A + F DA
Sbjct: 270 GPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDA 325
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 676 PTKLL-VSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADA 512
P+K L V NL ++ D++++F EFG + + YDR SG S G + F DA
Sbjct: 74 PSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDA 130
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 34.3 bits (75), Expect = 0.084
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVR 506
TK+ V L + SD + E F +FG ++ A V DR + +S G V + +A A R
Sbjct: 35 TKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAER 91
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTA 542
+ K+ + L +++ +KEL FG LK+ S++ D G S G A
Sbjct: 286 VVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 334
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTA 542
+ K+ + L +++ +KEL FG LK+ S++ D G S G A
Sbjct: 286 VVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 334
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTA 542
+ K+ + L +++ +KEL FG LK+ S++ D G S G A
Sbjct: 261 VVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 309
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTA 542
+ K+ + L +++ +KEL FG LK+ S++ D G S G A
Sbjct: 264 VVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 312
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 685 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
T GP +L VSN+ F + D+ +F + G + + ++ G S G V + DA R
Sbjct: 96 TDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG-SKGFGFVTMQNPDDADR 154
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLG 548
KL + L ++ +++E+F++FG ++ SV D+ G+S G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRG 183
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 685 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
T GP +L VSN+ F + D+ +F + G + + ++ G S G V + DA R
Sbjct: 96 TDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG-SKGFGFVTMQNPDDADR 154
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 525 LSNTTSAVPKDLPDRS*CTDALLRM-PNSENSSFISESDTPKSKLDTSSLVGP 680
+ N S+VP LP + + L + P+ +N++ + +D KSKL +SSL P
Sbjct: 359 VQNKISSVPSHLPTSNGGKENLRQSTPDEQNNNNNNNNDNEKSKLSSSSLSSP 411
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L + NL + ++ ++ E+F +FG ++ + + + GTA VV+E DA
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVR--QIRVGNTAETRGTAFVVYEDIFDA 70
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 640 VSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFER 524
V+ +I ++FSEFG++ ++ D+ G G A V FER
Sbjct: 330 VTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 640 VSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFER 524
V+ +I ++FSEFG++ ++ D+ G G A V FER
Sbjct: 330 VTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 640 VSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFER 524
V+ +I ++FSEFG++ ++ D+ G G A V FER
Sbjct: 116 VTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 155
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 640 VSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFER 524
V+ +I ++FSEFG++ ++ D+ G G A V FER
Sbjct: 330 VTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL*NSI 491
++ ++NL F V + E+F G + D+ G+S G + + +AV+ + +
Sbjct: 189 RIFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAVSML 248
Query: 490 TECHLMD 470
L D
Sbjct: 249 NGQRLFD 255
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 509 EAMKQYNGVPLDGRAMNIQLA-TSEINTLRPEARNRIGGASVGGTIRNNPKRGG 351
+AM+++NG L+G + LA + +P R R G GG N+ +RGG
Sbjct: 425 KAMEEWNGKELEGTVVEASLAKPPQEKKKKPVMRGR-GFGGAGGGAGNHGQRGG 477
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFE 527
L V L+ +D D++ +FS FG + + + D RSG SL A + F+
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFD 290
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFE 527
L V L+ +D D++ +FS FG + + + D RSG SL A + F+
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFD 290
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFE 527
L V L+ +D D++ +FS FG + + + D RSG SL A + F+
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFD 221
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 661 VSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERK 521
V L VS+ + FS FG ++ A D GR G V FERK
Sbjct: 193 VKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPTGEGIVEFERK 239
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 682 TGPTKLLVSNLDFGVSDSDIKELFSEFG 599
TG +L V NL V ++++KELFS G
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHG 140
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 661 VSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERK 521
V L VS+ + FS FG ++ A D GR G V FERK
Sbjct: 193 VKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPTGEGIVEFERK 239
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 682 TGPTKLLVSNLDFGVSDSDIKELFSEFG 599
TG +L V NL V ++++KELFS G
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHG 140
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGIL---------KSASVH--YDRSGRSLGTADVVFER 524
K++VSN+ V+ S ++ FS++G + K SV + R+ GTA + F++
Sbjct: 113 KIVVSNISAKVTQSQLQSFFSQYGKITSCILPREEKKTSVFGTLPKHSRNCGTATITFKK 172
Query: 523 KADAVRL*NSITE 485
A R N+ E
Sbjct: 173 SEHADRAKNANPE 185
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 682 TGPTKLLVSNLDFGVSDSDIKELFSEFG 599
TG +L V NL V ++++KELFS G
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHG 140
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 489 VILFHSLTASAFLSNTTSAVPKDLPDRS*CTDALLRMPNSENSSFISESDTPKSKLDTSS 668
V L H+LT S + S+T P + DRS + + N +N S E +PKS + +SS
Sbjct: 137 VNLQHTLTPSPYASSTPKHTPTNQMDRSKISFVIKPQINLKNCS--RELLSPKSSIFSSS 194
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 563
T + VSN+ V++ D+ F FG L + + Y RS
Sbjct: 200 TNVYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRS 236
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGTADVVF 530
+ V N+ + VS+ I+ +FS+ G +L VH +G+ G + F
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEF 66
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 506 AMKQYNGVPLDGRAMNIQLATSEIN 432
A+ Q+NGV +GRA+ + LA + N
Sbjct: 61 AVDQFNGVDFNGRALRVNLAQNRNN 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,632
Number of Sequences: 27780
Number of extensions: 235323
Number of successful extensions: 621
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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