Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30727
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 85 6e-17
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 79 3e-15
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 79 3e-15
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 79 3e-15
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 67 9e-12
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 65 4e-11
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 48 4e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 44 1e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 44 1e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 42 5e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 42 5e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 5e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 9e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 41 9e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 40 0.002
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 39 0.003
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.008
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 37 0.011
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 37 0.011
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 37 0.011
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 37 0.011
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 35 0.059
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 35 0.059
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 35 0.059
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.10
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 34 0.10
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 34 0.10
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 34 0.10
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 34 0.10
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 33 0.14
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.18
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 33 0.18
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 32 0.31
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 32 0.31
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 32 0.31
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 32 0.31
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 32 0.31
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 32 0.31
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 32 0.31
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 32 0.41
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.41
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 32 0.41
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 31 0.55
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 31 0.73
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 31 0.96
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.96
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 30 1.3
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 30 1.3
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 30 1.7
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 30 1.7
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 30 1.7
At1g05020.1 68414.m00503 epsin N-terminal homology (ENTH) domain... 30 1.7
At4g27330.1 68417.m03921 sporocyteless (SPL) identical to sporoc... 29 2.2
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 29 2.2
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 2.2
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 2.2
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.9
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 3.9
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 3.9
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 3.9
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 3.9
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 5.1
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 5.1
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 5.1
At5g24910.1 68418.m02949 cytochrome P450 family protein similar ... 28 5.1
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 28 5.1
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 5.1
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 28 5.1
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 28 6.8
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 28 6.8
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 28 6.8
At1g51460.1 68414.m05792 ABC transporter family protein similar ... 28 6.8
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 27 8.9
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 27 8.9
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 27 8.9
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 84.6 bits (200), Expect = 6e-17
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -3
Query: 691 TITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
+I TG TKL +SNLD+GVS+ DIKELFSE G LK +HYDRSGRS GTA+VVF R+ DA
Sbjct: 103 SIETG-TKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDA 161
Query: 511 V 509
+
Sbjct: 162 L 162
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 506 AMKQYNGVPLDGRAMNIQLATSEIN 432
A+K+YN V LDG+ M I++ + ++
Sbjct: 164 AVKRYNNVQLDGKLMKIEIVGTNLS 188
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
I TG TKL +SNLD+GV + DIKELF+E G LK +VH+DRSGRS GTA+VV+ R+ DA+
Sbjct: 82 IETG-TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAL 140
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = -2
Query: 506 AMKQYNGVPLDGRAMNIQLATSEINTL-----RPEARNRIGGASVGGTIRNNPKRGGG 348
A+K+YN V LDG+ M I++ + + T RP N G GG R +RGGG
Sbjct: 142 AVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGG 199
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
I TG TKL +SNLD+GV + DIKELF+E G LK +VH+DRSGRS GTA+VV+ R+ DA+
Sbjct: 18 IETG-TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAL 76
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = -2
Query: 506 AMKQYNGVPLDGRAMNIQLATSEINTL-----RPEARNRIGGASVGGTIRNNPKRGGG 348
A+K+YN V LDG+ M I++ + + T RP N G GG R +RGGG
Sbjct: 78 AVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGG 135
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = -3
Query: 688 ITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
I TG TKL +SNLD+GV + DIKELF+E G LK +VH+DRSGRS GTA+VV+ R+ DA+
Sbjct: 84 IETG-TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAL 142
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = -2
Query: 506 AMKQYNGVPLDGRAMNIQLATSEINTL-----RPEARNRIGGASVGGTIRNNPKRGGG 348
A+K+YN V LDG+ M I++ + + T RP N G GG R +RGGG
Sbjct: 144 AVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRGGQGRGGQQRGGG 201
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 67.3 bits (157), Expect = 9e-12
Identities = 29/54 (53%), Positives = 44/54 (81%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
T+L V+NLD GV++ DI+ELFSE G ++ ++HYD++GR GTA+VV+ R++DA
Sbjct: 93 TRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDA 146
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -2
Query: 509 EAMKQYNGVPLDGRAMNIQLATSEINTLRP-EARNRIGGASVGGTIRNNP--KRGGGG 345
+A+K+YN V LDGR M +++ ++ P R + + G ++ ++GGGG
Sbjct: 148 QALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGG 205
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/56 (46%), Positives = 45/56 (80%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
T + ++NLD GV++ DI+EL++E G LK ++HYD++GR G+A+VV+ R++DA++
Sbjct: 107 TTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQ 162
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 509 EAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGG 396
+AM++YN V LDGR M +++ + AR + G
Sbjct: 162 QAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTG 199
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL*NSI 491
L V NLD V+D ++ELF+EFG + S V D SG S G+ V F ++A R+ N +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADA 512
L V +LDF V+DS + + F+E + S V D + SLG V + DA
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDA 100
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/70 (37%), Positives = 35/70 (50%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL*NS 494
T + V NL +D D+K F E+G + SA V D G+S G V FE DA R S
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 493 ITECHLMDEQ 464
+ H D++
Sbjct: 89 LNG-HKFDDK 97
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
+ L V NLD +SD +KE+FS FG + S+ V D +G S G+ V F +A
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEA 185
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR-SLGTADVVFERKADAVR 506
L VSNLDF +++SDI LFS FG + +V DR R S G A V++ + DA +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAK 113
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
T + V NL +SD ++ ++F EFG+ S + D G+S G V FE DA R
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAAR 279
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVRL*NS 494
+L V NL +GV D ++ LF+E G + A V YDR SGRS G V + + NS
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 493 ITECHLMDEQ 464
+ L Q
Sbjct: 310 LNGADLDGRQ 319
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKAD 515
KL V NL F V + + +LF G ++ V YD+ +GRS G V A+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAE 152
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVRL*NS 494
+L V NL +GV D ++ LF+E G + A V YDR SGRS G V + + NS
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 493 ITECHLMDEQ 464
+ L Q
Sbjct: 318 LNGADLDGRQ 327
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKAD 515
KL V NL F V + + +LF G ++ V YD+ +GRS G V A+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAE 152
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = -3
Query: 691 TITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
T +G + + NLD + + + E FS FG + S V D +GRS G V FE++ A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 511 VRL*NSITECHLMDEQ 464
+ + + D+Q
Sbjct: 190 QAAIDKLNGMLMNDKQ 205
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
L + NLD V D +KE+FSE+G + S+ V + G S G V + +A+R
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 387
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL*NS 494
+ L +LD V+++ + +LF + S V D++ RSLG A + F DA R +
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 493 ITECHLMD 470
+ L D
Sbjct: 109 LNYTPLFD 116
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAV 509
+KL + L + V + +K+ FS FG + + YD+ SGRS G V F + DA+
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = -3
Query: 691 TITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
T +G + + NLD + + + E FS FG + S V D GRS G V FE++ A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 511 VRL*NSITECHLMDEQ 464
+ + L D+Q
Sbjct: 186 QAAIDKLNGMLLNDKQ 201
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
+ L + NLD V+D +KE+FSE+G + S V + G S G V + +A+
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEAL 382
Score = 34.7 bits (76), Expect = 0.059
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL*NS 494
+ L V +LD V++S + +LF++ + + V D + RSLG A V F DA R S
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104
Query: 493 ITECHLMD 470
+ + D
Sbjct: 105 LNYAPIRD 112
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
++ V NL +GV D ++ LFSE G + A V YDR SGRS G V ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLG 548
KL V NL F V + + +LF G ++ V YD+ +GRS G
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRG 133
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
T + V NL +D+D+K LF EFG + SA V D G+S V FE+ AV
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAV 173
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
L V NLD V ++ ++ELFSEFG + S V +G S G V F +A
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEA 276
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 682 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF 530
+G + V NLD + + + ++FS FG + S V D SG S G V F
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQF 78
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL*NS 494
TKL V N+ F + ++++LFS FG +KS + G+ G A V F K +A+ +
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 493 ITECH 479
+ H
Sbjct: 729 LASTH 733
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
T L + NLD VS+ ++E F+EFG + S ++ D + G A V F+ DA R
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARR 256
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
+ + V N++ V++ ++++ FS+ G + S + D G+S G V F +A+
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAI 358
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERK 521
G + V NL V+++ ++++F +FG + S V G+S G V FE++
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQE 162
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADA 512
TKL + L +G D+ +++ F+ FG + A V DR +GRS G V F + A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAA 89
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADA 512
TKL + L +G D+ +++ F+ FG + A V DR +GRS G V F + A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAA 89
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL*NSI 491
KL V L VS+++++ LFSE+G +K + S G + +E K AV ++
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 490 TECHLMD 470
H+M+
Sbjct: 170 NGRHIME 176
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVRL*NSI 491
KL V L VS+++++ LFSE+G +K + S G + +E K AV ++
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 490 TECHLMD 470
H+M+
Sbjct: 161 NGRHIME 167
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
GP ++ V L + ++S ++EL FG LK + DR +G S G A V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
GP ++ V L + ++S ++EL FG LK + DR +G S G A V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
GP ++ V L + ++S ++EL FG LK + DR +G S G A V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADA 512
KL+V + + + +K+ S+FG L+ V DRS GRS G V F DA
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA 57
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLG 548
++ V NL + V + +++LFSE G + A V YDR +GRS G
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 286
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVRL*NS 494
KL + + + ++ +KE FS FG + A + DR +GR+ G VVF A A +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV--- 63
Query: 493 ITECHLMD 470
ITE H +D
Sbjct: 64 ITEKHNID 71
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 563
K+ V L V++SD K F +FG V YD +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVRL*NS 494
KL + + + ++ +KE FS FG + A + DR +GR+ G VVF A A +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV--- 63
Query: 493 ITECHLMD 470
ITE H +D
Sbjct: 64 ITEKHNID 71
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 563
K+ V L V++SD K F +FG V YD +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADA 512
+LVS + + DI F +FG +K+ +++ D RSG G A + +E+K +A
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEA 149
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = -3
Query: 685 TTGP-TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADA 512
++GP TKL VS L F ++ +++ F +FG L ++ D+ + R G A + +E + +A
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 511 VR 506
++
Sbjct: 132 MK 133
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVR 506
T L ++NLD VS+ + +FS+FG + + + D G S G A + FE A R
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGR 72
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASV 578
T + V LD V+D D+K+ FSEFG + S +
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
+ V L + +D D++ FS+FG + + + DR SGRS G V F+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
+ V L + +D D++ FS+FG + + + DR SGRS G V F+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
+ V L + +D D++ FS+FG + + + DR SGRS G V F+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
+ V L + +D D++ FS+FG + + + DR SGRS G V F+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF 530
T + V NL V+D + LFS++G + S V D GRS G V F
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNF 249
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF 530
+ L V NL ++++ ++E+F +G + SA V +GRS G V F
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCF 351
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 682 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVR 506
T TK+ V NL + + D++ F +FG + A+V + GRS G + F VR
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 679 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
GP ++ V L + ++ I+EL FG L+ ++ DR +G S G A V++
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQ 424
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGTADVVFERKADA 512
+ V+N+ FG + + F++FG +LK+ V +G+ G+A + F RK A
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 570
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERK 521
L V L+ D D+ +FS FG + SA V D ++G SL A + FE K
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENK 294
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASV 578
T + V LD V+D D+K+ F+EFG + S +
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI 335
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 661 VSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERK 521
V LD + D+ ++FS+FG + + + YDR +G+S V FE +
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEE 58
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 557
TKL V N+ F + ++++LF+ FG +KS + GR
Sbjct: 351 TKLHVKNIAFEATMKEVRQLFTPFGQIKSVGLPERTKGR 389
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 691 TITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKAD 515
T T TK+ V L + ++ F +FG + A V D+ +GRS G V F+
Sbjct: 16 TTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Query: 514 AVR 506
A+R
Sbjct: 76 AMR 78
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 676 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADA 512
PT LLV NL D+++ F +FG +K + D +G G V F ADA
Sbjct: 35 PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA 90
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 685 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILK 590
++GP+ LL+ NL +D+++ F FG LK
Sbjct: 43 SSGPSGLLIRNLPLDARPNDLRDSFERFGPLK 74
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELF--SEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
KL VSNL + + ++ELF ++F + + V D GRS G V F + +A
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEA 249
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFE 527
K+ V L V++++ K+ F++FG++ V YD R+ R G + ++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYD 82
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFE 527
K+ V L V++++ K+ F++FG++ V YD R+ R G + ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYD 155
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVF 530
KL + + + S+ +++ F FG + A + DR +GR+ G VVF
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFE 527
K+ V L V++++ K+ F++FG++ V YD R+ R G + ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYD 155
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVF 530
KL + + + S+ +++ F FG + A + DR +GR+ G VVF
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At1g05020.1 68414.m00503 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related Similar to clathrin assembly protein
gb|X68878 (AP180) from Rattus norvegicus; contains Pfam
PF01417: ENTH domain. ENTH (Epsin N-terminal homology)
domain; EST gb|W43552 comes from this gene
Length = 653
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 658 SNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTA 542
S+LDFG S D E +S++G +S S+ S GT+
Sbjct: 359 SSLDFGDSTIDTSERYSDYGSFRSTSLEDLMSRTEAGTS 397
>At4g27330.1 68417.m03921 sporocyteless (SPL) identical to
sporocyteless SPL (MADS-box related protein)
[Arabidopsis thaliana] gi|5566240|gb|AAD45344
Length = 314
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 470 RAMNIQLATSEINTLRPEARNRIGGAS-VGGTIRNNPKRGGGGIR 339
RA ++ +++ IN EA N G G + NP+ G GG++
Sbjct: 233 RAASVSASSTTINPYFNEATNHTGPMEEFGSYMEGNPRNGSGGVK 277
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 676 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADA 512
PT LLV NL D++ F +FG +K + D +G G + F ADA
Sbjct: 36 PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADA 91
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
T++ V NLD V++ ++++ F FG+L++ V + R G A + F+ + DA+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWV----ARRPPGYAFLEFDDERDAL 52
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
T++ V NLD V++ ++++ F FG+L++ V + R G A + F+ + DA+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWV----ARRPPGYAFLEFDDERDAL 52
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3
Query: 661 VSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
V N D+ SD++ LFS+FG +K R G A V FE + DA
Sbjct: 6 VGNFDYDTRHSDLERLFSKFGRVK-------RVDMKSGYAFVYFEDERDA 48
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL V +L+ ++ +++E+F +FG ++ + D +S G V + K A+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAM 265
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAV 509
KL V +L+ ++ +++E+F +FG ++ + D +S G V + K A+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAM 265
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADA 512
L V +L V+++ +KE+F FG + + DR+ G V F+ +ADA
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADA 152
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS-GRSLGTADVVFERKADA 512
L V +L V+++ +KE+F FG + + DR+ G V F+ +ADA
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADA 152
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAV 509
K+ V L +++ + K F +FG + V YD + R G + F+ DAV
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD-SDDAV 164
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAV 509
K+ V L +++ + K F +FG + V YD + R G + F+ DAV
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD-SDDAV 164
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAV 509
K+ V L +++ + K F +FG + V YD + R G + F+ DAV
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD-SDDAV 164
>At5g24910.1 68418.m02949 cytochrome P450 family protein similar to
Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
similar to fatty acid omega-hydroxylase cytochrome P450
4A11 - Homo sapiens, PIR:I53015; supported by cDNA:
gi_16604323_gb_AY058060.1_
Length = 532
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 664 LVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERK 521
++S FG S S KE+FS+ L+ A H + G DVVF K
Sbjct: 221 VISRACFGSSFSKGKEIFSKLRCLQKAITHNNILFSLNGFTDVVFGTK 268
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFE 527
K+ V L +++++ K F +FG + V YD + R G + F+
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 171
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADA 512
+++ V NLD V++ ++++ F FG+++S V + R G A + FE DA
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWV----ARRPPGYAFLDFEDSRDA 51
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 676 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFE 527
P+K+ V L +KE F FG + A V DR SG S G V ++
Sbjct: 35 PSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYD 85
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFG 599
T + VSN+ G +D D+KE FS G
Sbjct: 4 TTVKVSNVSLGATDRDLKEFFSFSG 28
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 670 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVF 530
K+ VSN+ + + E FS FG ++ + D+ +GR G A V+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVY 275
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKAD 515
TKL NL + V + + ++ +F + V Y+R +G+S G A V D
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVED 138
>At1g51460.1 68414.m05792 ABC transporter family protein similar to
SP|Q9UNQ0 ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) {Homo sapiens};
contains Pfam profile PF00005: ABC transporter
Length = 678
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 680 WSYQAACIQFGLWSIRFRYKGTIFGI 603
W Y + I +G W+++ YK + G+
Sbjct: 545 WRYPVSYINYGAWALQGAYKNEMIGV 570
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 667 LLVSNLDFGVSDSDIKELFSEFGILKS 587
LLV N+ V D ++K LF +FG +++
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQA 245
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVF 530
TK+ V L + ++ F +FG + A V D+ SGRS G V F
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 673 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVF 530
TK+ V L + ++ F +FG + A V D+ SGRS G V F
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,078
Number of Sequences: 28952
Number of extensions: 209234
Number of successful extensions: 673
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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