Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30725
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   136   4e-33
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    28   1.5  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   2.0  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   2.0  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   2.0  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.7  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.5  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    26   4.7  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  136 bits (328), Expect = 4e-33
 Identities = 63/85 (74%), Positives = 71/85 (83%)
 Frame = +3

Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434
           QKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+G
Sbjct: 76  QKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKG 135

Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMI 509
           CEVV+SGKLR  RAKSMKF  G MI
Sbjct: 136 CEVVISGKLRAARAKSMKFADGFMI 160



 Score =  114 bits (275), Expect = 1e-26
 Identities = 58/82 (70%), Positives = 64/82 (78%)
 Frame = +1

Query: 37  AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLG 216
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ +LG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 217 EKGRIIRELTSVVRSDSTFQSN 282
           EKGR IRELT++V+    F  N
Sbjct: 63  EKGRRIRELTALVQKRFKFAEN 84



 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 36/65 (55%), Positives = 47/65 (72%)
 Frame = +2

Query: 509 HSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 688
           HSG P  D++++ATRHVLLRQGVLG+KVKIMLP   + K   KK  PD ++V +PK+E  
Sbjct: 161 HSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEE- 216

Query: 689 PLEPP 703
           P+  P
Sbjct: 217 PITKP 221


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +1

Query: 100 NEFLTRELAEDGYSGVEVRVTPIRSEI---IIMATRTQSMLGEKGRIIRELTSVVRSDST 270
           +EFLT    +DG S V   V P R  I   II     ++ L E  ++  E  ++   ++ 
Sbjct: 547 SEFLTNA-PKDGASAVTWGVYPGREIIQSTIIAEVSFKAWLSESFQVWGEWANLYSKNTP 605

Query: 271 FQSNL*NCMLKRWLL 315
            +  L NC+  RWL+
Sbjct: 606 SRKLLENCINDRWLV 620


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 305 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 409
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 305 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 409
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 305 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 409
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = +3

Query: 207 YARRERTHNP*AHFRSQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 386
           YAR+ R  NP  H R  KRF    ++     E+       AI Q     Y   G L  RR
Sbjct: 80  YARKARKSNPNPHKRRIKRFRNLLKTFACRIERANDGDHQAIWQTLRYAYSQTGPLRHRR 139

Query: 387 ACY 395
             Y
Sbjct: 140 LHY 142


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 165 HPLGDHYYGHQDTEYARRERTHNP*AHFRSQKRFNIPEQSVEL 293
           H  G+ Y GH   ++A+    HN  A+F     + + +Q + L
Sbjct: 710 HIAGESYAGHYIPQFAKEIMEHNQGANFFVASGYEMEKQYINL 752


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = +1

Query: 61  RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII------IMATRTQSMLGEK 222
           R  V D + +A L E L        Y G      P RS I       I+        G  
Sbjct: 374 RMLVTDPLKRATLEEVLNHPWMIRNYEGPPASFAPERSPITLPLDPEIIREMNGFDFGPP 433

Query: 223 GRIIRELTSVVRSDSTFQS 279
            +I+RELT V+ S++ +QS
Sbjct: 434 EKIVRELTKVISSEA-YQS 451


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 641 PQPDHILVTEPKDEPVPLEPPA 706
           P P  ++V  P   P+P+ PPA
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPA 755


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 113 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDA*SVSSLP 250
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,896
Number of Sequences: 5004
Number of extensions: 64238
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)