Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30725
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 153 2e-37
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 32 0.52
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 0.91
05_01_0563 + 4914032-4914151,4914322-4914402,4915097-4915181,491... 30 2.1
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 29 2.8
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.7
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 29 3.7
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 3.7
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 4.9
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 4.9
06_01_0525 - 3800578-3801018,3801395-3801504,3801608-3801683,380... 28 6.4
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 28 6.4
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 28 6.4
08_01_0346 - 3063440-3064189 28 8.5
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 28 8.5
03_05_1034 + 29870693-29870738,29870849-29871036 28 8.5
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 8.5
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 153 bits (370), Expect = 2e-37
Identities = 72/86 (83%), Positives = 77/86 (89%)
Frame = +3
Query: 255 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 434
QKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+G
Sbjct: 76 QKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 135
Query: 435 CEVVVSGKLRGQRAKSMKFVHGLMIT 512
CEV+VSGKLR QRAKSMKF G MI+
Sbjct: 136 CEVIVSGKLRAQRAKSMKFKDGYMIS 161
Score = 123 bits (296), Expect = 2e-28
Identities = 62/78 (79%), Positives = 67/78 (85%)
Frame = +1
Query: 49 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSMLGEKGR 228
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ++LGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 229 IIRELTSVVRSDSTFQSN 282
IRELTSVV+ F N
Sbjct: 67 RIRELTSVVQKRFNFPEN 84
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2
Query: 512 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 682
SG P N Y+++A RHVLLRQGVLGIKVKIML WD +GK GP P PD + + PKDE
Sbjct: 162 SGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDE 218
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 559 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARA 690
A +T S R G++ + P R+E + T RP PG+ + A A
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 622 QERPEEATTRPHPGNRAQGRARAPR 696
Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>05_01_0563 +
4914032-4914151,4914322-4914402,4915097-4915181,
4915595-4915662,4915904-4916005,4916300-4916389,
4916632-4916706,4916782-4916814,4917293-4917367,
4917954-4918004,4918247-4918327
Length = 286
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 387 ACYGVL---RFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMITLET 521
+C GV+ +FI ++G + E + K+ G+R S + GL + +ET
Sbjct: 221 SCAGVMYLCQFIEQNGGKLPERLEGSKMAGKRFGSQNLIQGLQLAIET 268
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 PKKPQPDHILVTEPKDEPVPLEPPAK 709
P+ +PD +LV P P PL P A+
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAAR 154
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 489 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 385
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 560 LLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPP 703
+ ++ G K + L D +G GPKK + + KD PL PP
Sbjct: 426 IFQESGFGGKETLKLEDDLKGATGPKKSETEKSATVPLKDGDGPLPPP 473
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 527 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 676
++ +N H+ +R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 110 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 214
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -1
Query: 174 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 73
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>06_01_0525 -
3800578-3801018,3801395-3801504,3801608-3801683,
3801757-3801909,3802088-3802159,3802242-3802322,
3802936-3803001,3803117-3803182,3803277-3803327,
3803429-3803512,3803988-3804088,3804188-3804329,
3804820-3804917,3805194-3805263,3805409-3805477
Length = 559
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 530 DYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPP 703
+YV A V + VL I+ K +++ + P P+P+ EP+ EPV E P
Sbjct: 287 EYVTEAPT-VAQKDKVLAIEYKKEAEEEEKPASPPPAPEPEPEQEPEPEPEPVKEEAP 343
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 585 SRSKSCCRGTSKARTARRSHNQTTSW*QSPRTSPCPSSH 701
S S+S R S++R+ RS +++ S +SPR+ SH
Sbjct: 198 SHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSH 236
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 559 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAP 693
A + R+TRN G A + RP + T + G A AP
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP 1205
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 339 AESLRYKLIGGLAVRRACYGVLR 407
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +2
Query: 416 GIWCPWL*SCCIWQAAWSTCQINEVCTWTHDHSGDPCNDYVNTATRHVLLRQGVL 580
G+W P + Q W I C W D G C + A +LLR+GVL
Sbjct: 482 GLWSPHVSEQYCRQTIWIALSIRYCCVW--DSGG--CLTHAQNAD-EILLRRGVL 531
>03_05_1034 + 29870693-29870738,29870849-29871036
Length = 77
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 236 VSSLP*SEAIQHSRAICRIVC*KGGY 313
+S L E I+H+ A+C + C KG Y
Sbjct: 14 ISGLVMLERIEHTEAVCTLFCAKGTY 39
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 623 KNGPKKPQPDHILVTEPKDEPVPLEPPA 706
+NGP P PDH+L P P P PPA
Sbjct: 150 QNGPPPP-PDHVLKKVP-SHPSPPPPPA 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,425,890
Number of Sequences: 37544
Number of extensions: 476528
Number of successful extensions: 1725
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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